0
votes
1
answer
135
views
1
answer
limma removeBatchEffect -- strange values in presence of NAs
limma removebatcheffect() written 5 months ago by jf10 • updated 5 months ago by Gordon Smyth35k
1
vote
1
answer
323
views
1
answer
RNA-seq Batch Correction
limma edger rna-seq removebatcheffect() written 10 months ago by cvu0 • updated 10 months ago by Aaron Lun21k
1
vote
0
answers
430
views
0
answers
7
votes
2
answers
1.1k
views
6 follow
2
answers
Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect() written 2.7 years ago by Ekarl230 • updated 10 months ago by alakatos80
1
vote
1
answer
453
views
1
answer
Batch effect removal with Deseq2
limma deseq2 removebatcheffect() batch effect written 12 months ago by lirongrossmann20 • updated 12 months ago by Michael Love20k
4
votes
1
answer
1.5k
views
1
answer
deseq2 correcting for batch effects
deseq2 removebatcheffect() batch effect design matrix written 14 months ago by Assa Yeroslaviz1.4k • updated 14 months ago by Michael Love20k
1
vote
1
answer
545
views
1
answer
1
vote
1
answer
655
views
1
answer
1
vote
1
answer
805
views
1
answer
3
votes
2
answers
499
views
2
answers
5
votes
2
answers
2.4k
views
2
answers
Pre-processing of RNA-Seq data for WGCNA and DGE
deseq2 wgcna voom rna-seq removebatcheffect() written 2.2 years ago by gokce.ouz40 • updated 2.2 years ago by Peter Langfelder1.6k
11
votes
1
answer
635
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 2.4 years ago by yi.huang30 • updated 2.4 years ago by Gordon Smyth35k
12
votes
3
answers
10k
views
9 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.0 years ago by AB30 • updated 2.5 years ago by adam0
2
votes
2
answers
417
views
2
answers
2
votes
1
answer
423
views
1
answer
9
votes
2
answers
3.6k
views
2
answers
Estimating and removing batch effects from rna-seq dataset
rnaseq limma sva removebatcheffect() batch effect written 3.2 years ago by AB30 • updated 3.2 years ago by Jeff Leek530
5
votes
1
answer
1.7k
views
1
answer
voom + removeBatchEffect + gene clustering
clustering limma voom removebatcheffect() batch effect written 3.4 years ago by ale.breschi10 • updated 3.4 years ago by Gordon Smyth35k
2
votes
1
answer
1.8k
views
1
answer
RNA-seq: Batch-free expression values
limma edger removebatcheffect() written 4.0 years ago by Ekarl230 • updated 4.0 years ago by Aaron Lun21k
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