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1
vote
1
answer
83
views
1
answer
Differential analysis with RSEM normalized counts using limma without voom
limma differential gene expression tcga rsem written 11 days ago by ghk • 0 • updated 11 days ago by James W. MacDonald ♦ 43k
5
votes
1
answer
264
views
1
answer
Clustering differential expression results from voomWithQualityWeights
limma edger rna rsem written 3 months ago by hrishi27n • 0 • updated 3 months ago by Gordon Smyth ♦ 30k
0
votes
0
answers
275
views
0
answers
How to normalize-transform rsem.genes.results of TCGA RNA-seq v2?
rnaseq normalization R tcga rsem written 4 months ago by panagiotis.mokos • 10
0
votes
1
answer
208
views
1
answer
RSEM output in DeSeq2
deseq2 count matrix rsem written 5 months ago by kmeusemann • 0 • updated 5 months ago by Michael Love ♦ 12k
22
votes
3
answers
629
views
8 follow
3
answers
Possible ways of performing differential gene expression and analysis of RNA-Seq data from normalized counts of RSEM software
rnaseq normalization edger tcga rsem written 6 months ago by svlachavas • 540 • updated 6 months ago by Gordon Smyth ♦ 30k
0
votes
1
answer
660
views
1
answer
Expected counts from RSEM in DESeq2
deseq2 rsem expected_counts raw_counts written 6 months ago by chudar.chudar • 0 • updated 6 months ago by Michael Love ♦ 12k
5
votes
2
answers
673
views
2
answers
Voom: need at least two non-NA values to interpolate
voom fpkm limma voom rsem written 10 months ago by komal.rathi • 20
0
votes
3
answers
320
views
3
answers
Using Scran with RSEM/DEseq
normalization edger deseq2 scran rsem written 11 months ago by a.guerra • 0
4
votes
2
answers
509
views
2
answers
RSEM expected counts to limma-voom
limma voom rsem written 12 months ago by Jake • 50 • updated 12 months ago by Gordon Smyth ♦ 30k
4
votes
1
answer
260
views
1
answer
assigning differential exons to trascripts
dexseq differential gene expression differential exon usage rsem written 13 months ago by Assa Yeroslaviz • 1.3k • updated 13 months ago by James W. MacDonald ♦ 43k
0
votes
2
answers
455
views
2
answers
DESeq2 size factors estimation after RSEM quantification
deseq2 estimatesizefactors tximport rsem written 14 months ago by Hugo Varet • 70
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