0
votes
0
answers
60
views
0
answers
1
vote
0
answers
92
views
0
answers
0
votes
1
answer
64
views
1
answer
Using tximport on RSEM abundance date
rnaseq tximport rsem written 10 weeks ago by raeganlynn1230 • updated 10 weeks ago by Michael Love19k
1
vote
1
answer
99
views
1
answer
0
votes
1
answer
82
views
1
answer
countsFromAbundance for gene-level RSEM import in tximport
tximport rsem written 3 months ago by celi00010 • updated 3 months ago by Michael Love19k
0
votes
0
answers
81
views
0
answers
RSEM output in txtimport
rsem txtimport written 3 months ago by gat20100
0
votes
1
answer
209
views
1
answer
0
votes
1
answer
286
views
1
answer
2
votes
1
answer
135
views
1
answer
tximport failing at importing TPM instead of FPKM
rnaseq tximport rsem written 6 months ago by fresard.laure0 • updated 6 months ago by rosabellascottgm0
3
votes
2
answers
264
views
2
answers
0
votes
1
answer
185
views
1
answer
Data object format for deseq2
deseq2 R rsem written 8 months ago by tim.ivanov.920 • updated 8 months ago by Michael Love19k
1
vote
1
answer
354
views
1
answer
1
vote
1
answer
394
views
1
answer
Importing RSEM transcript-level data using tximport
tximport rsem written 9 months ago by Patrick Kimes0 • updated 9 months ago by Michael Love19k
0
votes
1
answer
395
views
1
answer
Tximport with RSEM error
rsem written 11 months ago by hs.lansdell10 • updated 11 months ago by k.vitting.seerup20
2
votes
1
answer
297
views
1
answer
Obtaining transcript names in RSEM
tximport rsem written 12 months ago by deena10 • updated 12 months ago by Michael Love19k
0
votes
1
answer
358
views
1
answer
Using RSEM reads for DESeq2
deseq2 rsem written 12 months ago by deeptiptl740 • updated 12 months ago by Michael Love19k
3
votes
1
answer
549
views
1
answer
Filtering step in Differential analysis with RSEM values
edger differential gene expression rsem written 13 months ago by Biologist70 • updated 13 months ago by Gordon Smyth35k
0
votes
1
answer
759
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 14 months ago by arubio0 • updated 14 months ago by Gordon Smyth35k
1
vote
1
answer
407
views
1
answer
5
votes
1
answer
810
views
1
answer
Clustering differential expression results from voomWithQualityWeights
limma edger rna rsem written 17 months ago by hrishi27n0 • updated 17 months ago by Gordon Smyth35k
0
votes
0
answers
879
views
0
answers
0
votes
1
answer
588
views
1
answer
RSEM output in DeSeq2
deseq2 count matrix rsem written 19 months ago by kmeusemann0 • updated 19 months ago by Michael Love19k
24
votes
3
answers
2.3k
views
9 follow
3
answers
0
votes
1
answer
2.6k
views
1
answer
Expected counts from RSEM in DESeq2
deseq2 rsem expected_counts raw_counts written 20 months ago by chudar.chudar0 • updated 20 months ago by Michael Love19k
5
votes
2
answers
1.9k
views
2
answers
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