Showing: rsemreset
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Using tximport on RSEM abundance date
rnaseq tximport rsem written 17 months ago by raeganlynn1230 • updated 17 months ago by Michael Love26k
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countsFromAbundance for gene-level RSEM import in tximport
tximport rsem written 18 months ago by celi00010 • updated 18 months ago by Michael Love26k
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RSEM output in txtimport
rsem txtimport written 18 months ago by gat20100
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tximport failing at importing TPM instead of FPKM
rnaseq tximport rsem written 21 months ago by fresard.laure0 • updated 21 months ago by rosabellascottgm0
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Data object format for deseq2
deseq2 R rsem written 23 months ago by tim.ivanov.920 • updated 23 months ago by Michael Love26k
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Importing RSEM transcript-level data using tximport
tximport rsem written 2.0 years ago by Patrick Kimes10 • updated 2.0 years ago by Michael Love26k
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Tximport with RSEM error
rsem written 2.1 years ago by hs.lansdell10 • updated 2.1 years ago by k.vitting.seerup100
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Obtaining transcript names in RSEM
tximport rsem written 2.2 years ago by deena10 • updated 2.2 years ago by Michael Love26k
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Using RSEM reads for DESeq2
deseq2 rsem written 2.3 years ago by deeptiptl740 • updated 2.3 years ago by Michael Love26k
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Filtering step in Differential analysis with RSEM values
edger differential gene expression rsem written 2.3 years ago by Biologist70 • updated 2.3 years ago by Gordon Smyth39k
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confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 2.4 years ago by arubio0 • updated 2.4 years ago by Gordon Smyth39k
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Clustering differential expression results from voomWithQualityWeights
limma edger rna rsem written 2.7 years ago by hrishi27n20 • updated 2.7 years ago by Gordon Smyth39k
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RSEM output in DeSeq2
deseq2 count matrix rsem written 2.8 years ago by kmeusemann0 • updated 2.8 years ago by Michael Love26k
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Expected counts from RSEM in DESeq2
deseq2 rsem expected_counts raw_counts written 3.0 years ago by chudar.chudar0 • updated 3.0 years ago by Michael Love26k
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