0
votes
1
answer
115
views
1
answer
0
votes
0
answers
81
views
0
answers
1
vote
0
answers
143
views
0
answers
0
votes
1
answer
87
views
1
answer
Using tximport on RSEM abundance date
rnaseq tximport rsem written 4 months ago by raeganlynn1230 • updated 4 months ago by Michael Love20k
1
vote
1
answer
136
views
1
answer
0
votes
1
answer
118
views
1
answer
countsFromAbundance for gene-level RSEM import in tximport
tximport rsem written 4 months ago by celi00010 • updated 4 months ago by Michael Love20k
0
votes
0
answers
109
views
0
answers
RSEM output in txtimport
rsem txtimport written 5 months ago by gat20100
0
votes
1
answer
315
views
1
answer
0
votes
1
answer
420
views
1
answer
2
votes
1
answer
158
views
1
answer
tximport failing at importing TPM instead of FPKM
rnaseq tximport rsem written 8 months ago by fresard.laure0 • updated 8 months ago by rosabellascottgm0
3
votes
2
answers
326
views
2
answers
0
votes
1
answer
217
views
1
answer
Data object format for deseq2
deseq2 R rsem written 10 months ago by tim.ivanov.920 • updated 10 months ago by Michael Love20k
1
vote
1
answer
380
views
1
answer
1
vote
1
answer
509
views
1
answer
Importing RSEM transcript-level data using tximport
tximport rsem written 11 months ago by Patrick Kimes0 • updated 11 months ago by Michael Love20k
1
vote
1
answer
531
views
1
answer
Tximport with RSEM error
rsem written 12 months ago by hs.lansdell10 • updated 12 months ago by k.vitting.seerup30
2
votes
1
answer
349
views
1
answer
Obtaining transcript names in RSEM
tximport rsem written 13 months ago by deena10 • updated 13 months ago by Michael Love20k
0
votes
1
answer
377
views
1
answer
Using RSEM reads for DESeq2
deseq2 rsem written 14 months ago by deeptiptl740 • updated 14 months ago by Michael Love20k
3
votes
1
answer
575
views
1
answer
Filtering step in Differential analysis with RSEM values
edger differential gene expression rsem written 15 months ago by Biologist70 • updated 15 months ago by Gordon Smyth35k
0
votes
1
answer
790
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 15 months ago by arubio0 • updated 15 months ago by Gordon Smyth35k
1
vote
1
answer
471
views
1
answer
5
votes
1
answer
918
views
1
answer
Clustering differential expression results from voomWithQualityWeights
limma edger rna rsem written 19 months ago by hrishi27n0 • updated 19 months ago by Gordon Smyth35k
0
votes
0
answers
963
views
0
answers
0
votes
1
answer
663
views
1
answer
RSEM output in DeSeq2
deseq2 count matrix rsem written 21 months ago by kmeusemann0 • updated 21 months ago by Michael Love20k
24
votes
3
answers
2.7k
views
9 follow
3
answers
0
votes
1
answer
2.9k
views
1
answer
Expected counts from RSEM in DESeq2
deseq2 rsem expected_counts raw_counts written 22 months ago by chudar.chudar0 • updated 22 months ago by Michael Love20k
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