0
votes
1
answer
37
views
1
answer
Using tximport on RSEM abundance date
rnaseq tximport rsem written 8 days ago by raeganlynn1230 • updated 8 days ago by Michael Love18k
0
votes
0
answers
20
views
0
answers
1
vote
1
answer
58
views
1
answer
0
votes
1
answer
36
views
1
answer
countsFromAbundance for gene-level RSEM import in tximport
tximport rsem written 27 days ago by celi00010 • updated 27 days ago by Michael Love18k
0
votes
0
answers
46
views
0
answers
RSEM output in txtimport
rsem txtimport written 6 weeks ago by gat20100
0
votes
1
answer
151
views
1
answer
0
votes
1
answer
215
views
1
answer
2
votes
1
answer
113
views
1
answer
tximport failing at importing TPM instead of FPKM
rnaseq tximport rsem written 4 months ago by fresard.laure0 • updated 4 months ago by rosabellascottgm0
3
votes
2
answers
217
views
2
answers
0
votes
1
answer
159
views
1
answer
Data object format for deseq2
deseq2 R rsem written 6 months ago by tim.ivanov.920 • updated 6 months ago by Michael Love18k
1
vote
1
answer
312
views
1
answer
1
vote
1
answer
285
views
1
answer
Importing RSEM transcript-level data using tximport
tximport rsem written 7 months ago by Patrick Kimes0 • updated 7 months ago by Michael Love18k
0
votes
1
answer
317
views
1
answer
Tximport with RSEM error
rsem written 8 months ago by hs.lansdell10 • updated 8 months ago by k.vitting.seerup20
2
votes
1
answer
263
views
1
answer
Obtaining transcript names in RSEM
tximport rsem written 9 months ago by deena10 • updated 9 months ago by Michael Love18k
0
votes
1
answer
333
views
1
answer
Using RSEM reads for DESeq2
deseq2 rsem written 10 months ago by deeptiptl740 • updated 10 months ago by Michael Love18k
3
votes
1
answer
501
views
1
answer
Filtering step in Differential analysis with RSEM values
edger differential gene expression rsem written 11 months ago by Biologist70 • updated 11 months ago by Gordon Smyth34k
0
votes
1
answer
715
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 11 months ago by arubio0 • updated 11 months ago by Gordon Smyth34k
1
vote
1
answer
350
views
1
answer
5
votes
1
answer
719
views
1
answer
Clustering differential expression results from voomWithQualityWeights
limma edger rna rsem written 15 months ago by hrishi27n0 • updated 15 months ago by Gordon Smyth34k
0
votes
0
answers
785
views
0
answers
0
votes
1
answer
528
views
1
answer
RSEM output in DeSeq2
deseq2 count matrix rsem written 17 months ago by kmeusemann0 • updated 17 months ago by Michael Love18k
24
votes
3
answers
2.1k
views
9 follow
3
answers
0
votes
1
answer
2.3k
views
1
answer
Expected counts from RSEM in DESeq2
deseq2 rsem expected_counts raw_counts written 18 months ago by chudar.chudar0 • updated 18 months ago by Michael Love18k
5
votes
2
answers
1.7k
views
2
answers
0
votes
3
answers
570
views
3
answers
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