0
votes
1
answer
42
views
1
answer
0
votes
1
answer
152
views
1
answer
2
votes
1
answer
92
views
1
answer
tximport failing at importing TPM instead of FPKM
rnaseq tximport rsem written 12 weeks ago by fresard.laure0 • updated 12 weeks ago by rosabellascottgm0
2
votes
2
answers
179
views
2
answers
0
votes
1
answer
137
views
1
answer
Data object format for deseq2
deseq2 R rsem written 4 months ago by tim.ivanov.920 • updated 4 months ago by Michael Love17k
1
vote
1
answer
276
views
1
answer
1
vote
1
answer
235
views
1
answer
Importing RSEM transcript-level data using tximport
tximport rsem written 5 months ago by Patrick Kimes0 • updated 5 months ago by Michael Love17k
0
votes
1
answer
233
views
1
answer
Tximport with RSEM error
rsem written 7 months ago by hs.lansdell10 • updated 7 months ago by k.vitting.seerup20
2
votes
1
answer
220
views
1
answer
Obtaining transcript names in RSEM
tximport rsem written 8 months ago by deena10 • updated 8 months ago by Michael Love17k
0
votes
1
answer
312
views
1
answer
Using RSEM reads for DESeq2
deseq2 rsem written 8 months ago by deeptiptl740 • updated 8 months ago by Michael Love17k
3
votes
1
answer
478
views
1
answer
0
votes
1
answer
671
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 10 months ago by arubio0 • updated 10 months ago by Gordon Smyth33k
1
vote
1
answer
295
views
1
answer
5
votes
1
answer
628
views
1
answer
Clustering differential expression results from voomWithQualityWeights
limma edger rna rsem written 13 months ago by hrishi27n0 • updated 13 months ago by Gordon Smyth33k
0
votes
0
answers
681
views
0
answers
0
votes
1
answer
461
views
1
answer
RSEM output in DeSeq2
deseq2 count matrix rsem written 15 months ago by kmeusemann0 • updated 15 months ago by Michael Love17k
24
votes
3
answers
1.8k
views
9 follow
3
answers
0
votes
1
answer
2.0k
views
1
answer
Expected counts from RSEM in DESeq2
deseq2 rsem expected_counts raw_counts written 16 months ago by chudar.chudar0 • updated 16 months ago by Michael Love17k
5
votes
2
answers
1.5k
views
2
answers
0
votes
3
answers
540
views
3
answers
6
votes
2
answers
799
views
2
answers
RSEM expected counts to limma-voom
limma voom rsem written 22 months ago by Jake60 • updated 22 months ago by Gordon Smyth33k
4
votes
1
answer
429
views
1
answer
1
vote
2
answers
759
views
2
answers
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