2
votes
2
answers
105
views
2
answers
0
votes
1
answer
92
views
1
answer
Data object format for deseq2
deseq2 R rsem written 4 weeks ago by tim.ivanov.920 • updated 4 weeks ago by Michael Love16k
1
vote
1
answer
199
views
1
answer
1
vote
1
answer
130
views
1
answer
Importing RSEM transcript-level data using tximport
tximport rsem written 11 weeks ago by Patrick Kimes0 • updated 11 weeks ago by Michael Love16k
0
votes
1
answer
147
views
1
answer
Tximport with RSEM error
rsem written 3 months ago by hs.lansdell10 • updated 3 months ago by k.vitting.seerup20
2
votes
1
answer
164
views
1
answer
Obtaining transcript names in RSEM
tximport rsem written 4 months ago by deena10 • updated 4 months ago by Michael Love16k
0
votes
1
answer
287
views
1
answer
Using RSEM reads for DESeq2
deseq2 rsem written 5 months ago by deeptiptl740 • updated 5 months ago by Michael Love16k
3
votes
1
answer
442
views
1
answer
Filtering step in Differential analysis with RSEM values
edger differential gene expression rsem written 6 months ago by ghk0 • updated 6 months ago by Gordon Smyth32k
0
votes
1
answer
630
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 6 months ago by arubio0 • updated 6 months ago by Gordon Smyth32k
1
vote
1
answer
238
views
1
answer
5
votes
1
answer
497
views
1
answer
Clustering differential expression results from voomWithQualityWeights
limma edger rna rsem written 10 months ago by hrishi27n0 • updated 10 months ago by Gordon Smyth32k
0
votes
0
answers
554
views
0
answers
0
votes
1
answer
379
views
1
answer
RSEM output in DeSeq2
deseq2 count matrix rsem written 12 months ago by kmeusemann0 • updated 12 months ago by Michael Love16k
24
votes
3
answers
1.4k
views
9 follow
3
answers
0
votes
1
answer
1.5k
views
1
answer
Expected counts from RSEM in DESeq2
deseq2 rsem expected_counts raw_counts written 13 months ago by chudar.chudar0 • updated 13 months ago by Michael Love16k
5
votes
2
answers
1.2k
views
2
answers
0
votes
3
answers
460
views
3
answers
4
votes
2
answers
725
views
2
answers
RSEM expected counts to limma-voom
limma voom rsem written 19 months ago by Jake50 • updated 19 months ago by Gordon Smyth32k
4
votes
1
answer
373
views
1
answer
1
vote
2
answers
675
views
2
answers
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