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1
vote
1
answer
100
views
1
answer
Install rtracklayer with the Error undefined symbol: OPENSSL_init_ssl (system Centos7.3 R3.5.1 openssl-1.1.1)
rtracklayer software error bioconductor openssl written 6 days ago by ruan_wei_dong • 0
0
votes
1
answer
35
views
1
answer
rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer liftover export.bw written 12 days ago by ang • 0 • updated 12 days ago by Michael Lawrence ♦ 10k
1
vote
1
answer
57
views
1
answer
How to convert bedgraph to wig
rtracklayer genomicranges written 13 days ago by ferbecneu • 0 • updated 13 days ago by Michael Lawrence ♦ 10k
0
votes
1
answer
76
views
1
answer
rtracklayer cannot export empty BED file
rtracklayer genomicranges bed written 19 days ago by foehn • 0 • updated 19 days ago by Michael Lawrence ♦ 10k
0
votes
1
answer
120
views
1
answer
browseGenome with Shiny
rtracklayer shiny browsegenome written 8 weeks ago by vivek82 • 0 • updated 7 weeks ago by Michael Lawrence ♦ 10k
3
votes
1
answer
93
views
1
answer
converting a fasta file to .2bit format
biostrings rtracklayer written 8 weeks ago by saripalligautam86 • 10 • updated 8 weeks ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
141
views
1
answer
rtracklayer export bedGraph cannot be loaded into UCSC
rtracklayer written 3 months ago by Nicolas Servant • 230 • updated 3 months ago by Michael Lawrence ♦ 10k
1
vote
1
answer
129
views
1
answer
Import Chain - Cannot Import Chain File
rtracklayer written 3 months ago by kipperf • 0 • updated 3 months ago by Michael Lawrence ♦ 10k
0
votes
1
answer
81
views
1
answer
motifs order on importing the motifs from bigWig file
rtracklayer R data import written 4 months ago by stefan.dvoretskii • 0 • updated 4 months ago by Michael Lawrence ♦ 10k
1
vote
1
answer
128
views
1
answer
makeTxdbFromUCSC fails to download
rtracklayer genomicfeatures maketxdbpackagefromucsc written 4 months ago by lalchungnungabt17 • 0 • updated 4 months ago by James W. MacDonald ♦ 48k
0
votes
0
answers
164
views
0
answers
Can't install rtracklayer - make: *** [ucsc/os.o] Error 1
rtracklayer written 6 months ago by creasyt • 0
3
votes
4
answers
392
views
4
answers
Issue with UCSC and rtracklayer: 'names' attribute [210] must be the same length as the vector [209]
rtracklayer ucsc ensgene written 7 months ago by chrisamiller • 0 • updated 7 months ago by max • 10
0
votes
1
answer
161
views
1
answer
rtracklayer::liftOver parameters (minMatch)
rtracklayer parameters liftover minmatch written 8 months ago by Nik dAK • 0 • updated 8 months ago by Michael Lawrence ♦ 10k
0
votes
2
answers
188
views
2
answers
rtracklayer colorByStrand - is it possible to add quotes?
rtracklayer written 8 months ago by Janet Young • 730
0
votes
1
answer
145
views
1
answer
import bed file with track line fails
rtracklayer written 8 months ago by cbaribault • 0 • updated 8 months ago by Michael Lawrence ♦ 10k
1
vote
2
answers
142
views
2
answers
rtracklayer demo bug
rtracklayer written 8 months ago by felix.ernst • 0
0
votes
0
answers
253
views
0
answers
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
rtracklayer gviz http gviz-package written 10 months ago by enricoferrero • 570
1
vote
1
answer
215
views
1
answer
seqnames versus chrom
rtracklayer genomeinfodb biocgen written 11 months ago by felix.ernst • 0 • updated 11 months ago by Michael Lawrence ♦ 10k
0
votes
1
answer
303
views
1
answer
Add columns to granges object that sum score around range
rtracklayer granges R grang written 11 months ago by ssabri • 20 • updated 11 months ago by Michael Lawrence ♦ 10k
2
votes
2
answers
639
views
2
answers
possible Rtracklayer issue: TxDb errors in GenomicFeatures package-- cannot load TxDb with standard params from UCSC (issue began last night)
rtracklayer genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart written 12 months ago by james.dalgleish • 30 • updated 12 months ago by Michael Lawrence ♦ 10k
0
votes
0
answers
265
views
0
answers
Missing Information with transcriptlengthsfunction
rtracklayer genomicfeatures bioconductor transriptlengths written 12 months ago by michael.soutschek • 0
0
votes
0
answers
304
views
0
answers
How to get UCSC url when use rtracklayer, contain the track in the url ,it may be very useful
rtracklayer ucsc ucsctrack written 12 months ago by zhangqshxxzz • 0 • updated 12 months ago by James W. MacDonald ♦ 48k
0
votes
0
answers
299
views
0
answers
Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
rtracklayer goseq written 14 months ago by mgdrnl • 0
1
vote
2
answers
241
views
2
answers
The track cannot show in UCSC
rtracklayer written 14 months ago by zhangqshxxzz • 0
1
vote
1
answer
351
views
1
answer
Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?
rtracklayer software error bed written 15 months ago by Ryan C. Thompson ♦ 7.0k • updated 15 months ago by Michael Lawrence ♦ 10k
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