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0
votes
1
answer
77
views
1
answer
browseGenome with Shiny
rtracklayer shiny browsegenome written 6 days ago by vivek82 • 0 • updated 1 day ago by Michael Lawrence ♦ 10k
3
votes
1
answer
45
views
1
answer
converting a fasta file to .2bit format
biostrings rtracklayer written 7 days ago by saripalligautam86 • 10 • updated 7 days ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
91
views
1
answer
rtracklayer export bedGraph cannot be loaded into UCSC
rtracklayer written 5 weeks ago by Nicolas Servant • 230 • updated 5 weeks ago by Michael Lawrence ♦ 10k
1
vote
1
answer
99
views
1
answer
Import Chain - Cannot Import Chain File
rtracklayer written 8 weeks ago by kipperf • 0 • updated 8 weeks ago by Michael Lawrence ♦ 10k
0
votes
1
answer
55
views
1
answer
motifs order on importing the motifs from bigWig file
rtracklayer R data import written 11 weeks ago by stefan.dvoretskii • 0 • updated 11 weeks ago by Michael Lawrence ♦ 10k
1
vote
1
answer
93
views
1
answer
makeTxdbFromUCSC fails to download
rtracklayer genomicfeatures maketxdbpackagefromucsc written 3 months ago by lalchungnungabt17 • 0 • updated 3 months ago by James W. MacDonald ♦ 48k
0
votes
0
answers
121
views
0
answers
Can't install rtracklayer - make: *** [ucsc/os.o] Error 1
rtracklayer written 4 months ago by creasyt • 0
3
votes
4
answers
314
views
4
answers
Issue with UCSC and rtracklayer: 'names' attribute [210] must be the same length as the vector [209]
rtracklayer ucsc ensgene written 5 months ago by chrisamiller • 0 • updated 5 months ago by max • 10
0
votes
1
answer
126
views
1
answer
rtracklayer::liftOver parameters (minMatch)
rtracklayer parameters liftover minmatch written 6 months ago by Nik dAK • 0 • updated 6 months ago by Michael Lawrence ♦ 10k
0
votes
2
answers
152
views
2
answers
rtracklayer colorByStrand - is it possible to add quotes?
rtracklayer written 6 months ago by Janet Young • 730
0
votes
1
answer
123
views
1
answer
import bed file with track line fails
rtracklayer written 7 months ago by cbaribault • 0 • updated 7 months ago by Michael Lawrence ♦ 10k
1
vote
2
answers
117
views
2
answers
rtracklayer demo bug
rtracklayer written 7 months ago by felix.ernst • 0
0
votes
0
answers
208
views
0
answers
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
rtracklayer gviz http gviz-package written 8 months ago by enricoferrero • 570
1
vote
1
answer
184
views
1
answer
seqnames versus chrom
rtracklayer genomeinfodb biocgen written 9 months ago by felix.ernst • 0 • updated 9 months ago by Michael Lawrence ♦ 10k
0
votes
1
answer
261
views
1
answer
Add columns to granges object that sum score around range
rtracklayer granges R grang written 9 months ago by ssabri • 20 • updated 9 months ago by Michael Lawrence ♦ 10k
2
votes
2
answers
570
views
2
answers
possible Rtracklayer issue: TxDb errors in GenomicFeatures package-- cannot load TxDb with standard params from UCSC (issue began last night)
rtracklayer genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart written 10 months ago by james.dalgleish • 30 • updated 10 months ago by Michael Lawrence ♦ 10k
0
votes
0
answers
240
views
0
answers
Missing Information with transcriptlengthsfunction
rtracklayer genomicfeatures bioconductor transriptlengths written 10 months ago by michael.soutschek • 0
0
votes
0
answers
265
views
0
answers
How to get UCSC url when use rtracklayer, contain the track in the url ,it may be very useful
rtracklayer ucsc ucsctrack written 10 months ago by zhangqshxxzz • 0 • updated 10 months ago by James W. MacDonald ♦ 48k
0
votes
0
answers
252
views
0
answers
Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
rtracklayer goseq written 12 months ago by mgdrnl • 0
1
vote
2
answers
216
views
2
answers
The track cannot show in UCSC
rtracklayer written 12 months ago by zhangqshxxzz • 0
1
vote
1
answer
314
views
1
answer
Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?
rtracklayer software error bed written 13 months ago by Ryan C. Thompson ♦ 6.9k • updated 13 months ago by Michael Lawrence ♦ 10k
2
votes
1
answer
301
views
1
answer
Error in normSplitFactor(f, x)
rtracklayer genomicranges goseq written 13 months ago by mictadlo • 0 • updated 13 months ago by Michael Lawrence ♦ 10k
0
votes
1
answer
593
views
1
answer
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer R bioconductor liftover written 14 months ago by m.guelfi • 0 • updated 14 months ago by Michael Lawrence ♦ 10k
0
votes
1
answer
614
views
1
answer
liftOver function in rtracklayer package is not working
rtracklayer liftover written 14 months ago by beausoleilmo • 0 • updated 14 months ago by Michael Lawrence ♦ 10k
3
votes
1
answer
736
views
1
answer
(Big)wig file of complete chromosome
rtracklayer granges grangeslist bigwig import written 14 months ago by Assa Yeroslaviz • 1.4k • updated 14 months ago by Michael Lawrence ♦ 10k
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