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1
vote
1
answer
89
views
1
answer
Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?
rtracklayer software error bed written 8 days ago by Ryan C. Thompson ♦ 5.9k • updated 8 days ago by Michael Lawrence ♦ 9.5k
2
votes
1
answer
106
views
1
answer
Error in normSplitFactor(f, x)
rtracklayer genomicranges goseq written 10 days ago by mictadlo • 0 • updated 10 days ago by Michael Lawrence ♦ 9.5k
0
votes
1
answer
359
views
1
answer
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer R bioconductor liftover written 5 weeks ago by m.guelfi • 0 • updated 5 weeks ago by Michael Lawrence ♦ 9.5k
0
votes
1
answer
427
views
1
answer
liftOver function in rtracklayer package is not working
rtracklayer liftover written 6 weeks ago by beausoleilmo • 0 • updated 6 weeks ago by Michael Lawrence ♦ 9.5k
1
vote
1
answer
536
views
1
answer
(Big)wig file of complete chromosome
rtracklayer granges grangeslist bigwig import written 7 weeks ago by Assa Yeroslaviz • 1.3k • updated 7 weeks ago by Michael Lawrence ♦ 9.5k
28
votes
7
answers
1.6k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 7 months ago by Ramiro Magno • 60 • updated 9 weeks ago by aina.jene • 10
3
votes
1
answer
59
views
1
answer
Import gff from character?
rtracklayer gff import.gff3 gtf import written 10 weeks ago by Marlin • 20 • updated 10 weeks ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
81
views
0
answers
why merged paired end reads still have strand infomation?
dnaseq rtracklayer paired-end reads written 11 weeks ago by zwfanwz678 • 0
0
votes
0
answers
75
views
0
answers
How to generate CpG island Unmasked.bed file format for finding CpG island shores and shelves?
annotation rtracklayer genomes homo.sapiens bioconductor written 12 weeks ago by sivabala76 • 0
0
votes
0
answers
136
views
0
answers
Exporting a GenomicRanges object as GTF/GFF file
rtracklayer genomicranges gff export gtf written 3 months ago by rubi • 70
2
votes
4
answers
413
views
4
answers
"minfi" loading problem because of couldn't "bumphunter" load
rtracklayer minfi bumphunter loading error written 4 months ago by juan-pablo.cerapio-arroyo • 10 • updated 4 months ago by nilan666 • 0
3
votes
2
answers
190
views
2
answers
mm10 phastCons data for use with ATACseqQC
bsgenome rtracklayer phastcons atacseqqc written 4 months ago by crysis405 • 10 • updated 4 months ago by Ou, Jianhong • 990
2
votes
1
answer
163
views
1
answer
rtracklayer::import.bed does not close connections.
rtracklayer written 4 months ago by Charles Plessy • 30 • updated 4 months ago by Michael Lawrence ♦ 9.5k
3
votes
1
answer
299
views
1
answer
rtracklayer import.gff3 function no longer working in R 3.4
rtracklayer gff import.gff3 written 5 months ago by Keith Hughitt • 90 • updated 5 months ago by Martin Morgan ♦♦ 20k
2
votes
1
answer
182
views
1
answer
rtracklayer: how to export gff file with gene names included?
rtracklayer gff written 6 months ago by Jon Bråte • 130 • updated 6 months ago by Michael Lawrence ♦ 9.5k
0
votes
0
answers
178
views
0
answers
Accessing the BigWig files from the web
rtracklayer written 6 months ago by Mustafa ABUELQUMSAN • 0
2
votes
1
answer
166
views
1
answer
Why export of empty GRanges to GFF fails?
rtracklayer written 6 months ago by jiri.hon • 0 • updated 6 months ago by Michael Lawrence ♦ 9.5k
0
votes
2
answers
448
views
2
answers
browseGenome rtracklayer, save / export UCSC genome browser image e.g. as pdf
rtracklayer save file ucsc browsegenome image written 2.5 years ago by James Perkins • 60 • updated 7 months ago by maximilianh • 10
0
votes
2
answers
352
views
2
answers
rtracklayer redistributes UCSC source without the original license?
rtracklayer written 21 months ago by mdshw5 • 0 • updated 7 months ago by maximilianh • 10
2
votes
1
answer
208
views
1
answer
rtracklayer: how to view coordinates that failed liftover?
rtracklayer written 8 months ago by chang02_23 • 20 • updated 8 months ago by Michael Lawrence ♦ 9.5k
3
votes
1
answer
193
views
1
answer
Long elapsed time using `import.gff3` with a toy example
rtracklayer import.gff3 written 10 months ago by Marlin • 20 • updated 10 months ago by Martin Morgan ♦♦ 20k
2
votes
1
answer
272
views
1
answer
Strange first_time object in rtracklayer import
rtracklayer bigwig import written 10 months ago by zx8754 • 10 • updated 10 months ago by Michael Lawrence ♦ 9.5k
1
vote
1
answer
217
views
1
answer
rtracklayer - export.bw bug
rtracklayer bigwig export.bw written 11 months ago by story.benjamin • 0 • updated 10 months ago by Michael Lawrence ♦ 9.5k
3
votes
1
answer
200
views
1
answer
does import.bw with the selection argument take into account strand?
rtracklayer import.bw written 11 months ago by maltethodberg • 40 • updated 11 months ago by Michael Lawrence ♦ 9.5k
3
votes
1
answer
237
views
1
answer
How to extract transcripts from Txdb with length >100
rtracklayer genomicfeatures written 11 months ago by alexandr.gopanenko • 20 • updated 11 months ago by Martin Morgan ♦♦ 20k
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