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Change sign from Granges scores to visualize negative strand data
rtracklayer granges written 9 days ago by ferbecneu • 0 • updated 9 days ago by James W. MacDonald ♦ 49k
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How to filter gff based on certain gene list in rtracklayer?
rtracklayer gff filter written 15 days ago by alslonik • 0 • updated 15 days ago by Michael Lawrence ♦ 10k
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Bug in rtracklayer::import of amino acid fasta sequences
biostrings rtracklayer fasta import written 25 days ago by k.vitting.seerup • 60 • updated 25 days ago by Michael Lawrence ♦ 10k
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62
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rtracklayer BigBed format
rtracklayer ngs bigbed written 6 weeks ago by foehn • 30 • updated 6 weeks ago by Michael Lawrence ♦ 10k
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228
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Install rtracklayer with the Error undefined symbol: OPENSSL_init_ssl (system Centos7.3 R3.5.1 openssl-1.1.1)
rtracklayer software error bioconductor openssl written 11 weeks ago by ruan_wei_dong • 0
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rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer liftover export.bw written 12 weeks ago by ang • 0 • updated 12 weeks ago by Michael Lawrence ♦ 10k
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155
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How to convert bedgraph to wig
rtracklayer genomicranges written 12 weeks ago by ferbecneu • 0 • updated 12 weeks ago by Michael Lawrence ♦ 10k
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rtracklayer cannot export empty BED file
rtracklayer genomicranges bed written 3 months ago by foehn • 30 • updated 3 months ago by Michael Lawrence ♦ 10k
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183
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browseGenome with Shiny
rtracklayer shiny browsegenome written 4 months ago by vivek82 • 0 • updated 4 months ago by Michael Lawrence ♦ 10k
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1
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179
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converting a fasta file to .2bit format
biostrings rtracklayer written 4 months ago by saripalligautam86 • 10 • updated 4 months ago by Hervé Pagès ♦♦ 13k
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198
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rtracklayer export bedGraph cannot be loaded into UCSC
rtracklayer written 5 months ago by Nicolas Servant • 230 • updated 5 months ago by Michael Lawrence ♦ 10k
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173
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Import Chain - Cannot Import Chain File
rtracklayer written 6 months ago by kipperf • 0 • updated 6 months ago by Michael Lawrence ♦ 10k
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122
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motifs order on importing the motifs from bigWig file
rtracklayer R data import written 6 months ago by stefan.dvoretskii • 0 • updated 6 months ago by Michael Lawrence ♦ 10k
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173
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makeTxdbFromUCSC fails to download
rtracklayer genomicfeatures maketxdbpackagefromucsc written 7 months ago by lalchungnungabt17 • 0 • updated 7 months ago by James W. MacDonald ♦ 49k
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Can't install rtracklayer - make: *** [ucsc/os.o] Error 1
rtracklayer written 8 months ago by creasyt • 0
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4
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Issue with UCSC and rtracklayer: 'names' attribute [210] must be the same length as the vector [209]
rtracklayer ucsc ensgene written 9 months ago by chrisamiller • 0 • updated 9 months ago by max • 10
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rtracklayer::liftOver parameters (minMatch)
rtracklayer parameters liftover minmatch written 10 months ago by Nik dAK • 0 • updated 10 months ago by Michael Lawrence ♦ 10k
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228
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rtracklayer colorByStrand - is it possible to add quotes?
rtracklayer written 10 months ago by Janet Young • 730
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189
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import bed file with track line fails
rtracklayer written 11 months ago by cbaribault • 0 • updated 11 months ago by Michael Lawrence ♦ 10k
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2
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188
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rtracklayer demo bug
rtracklayer written 11 months ago by felix.ernst • 0
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Gviz IdeogramTrack fails with Error: failed to load HTTP resource
rtracklayer gviz http gviz-package written 12 months ago by enricoferrero • 570
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261
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seqnames versus chrom
rtracklayer genomeinfodb biocgen written 13 months ago by felix.ernst • 0 • updated 13 months ago by Michael Lawrence ♦ 10k
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373
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Add columns to granges object that sum score around range
rtracklayer granges R grang written 13 months ago by ssabri • 20 • updated 13 months ago by Michael Lawrence ♦ 10k
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possible Rtracklayer issue: TxDb errors in GenomicFeatures package-- cannot load TxDb with standard params from UCSC (issue began last night)
rtracklayer genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart written 14 months ago by james.dalgleish • 30 • updated 14 months ago by Michael Lawrence ♦ 10k
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Missing Information with transcriptlengthsfunction
rtracklayer genomicfeatures bioconductor transriptlengths written 14 months ago by michael.soutschek • 0
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