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create a full TXDB object from GFF3 data for a non-system organism / denovo assembly
rtracklayer genomicfeatures written 6 weeks ago by stephane.plaisance • 10 • updated 6 weeks ago by Hervé Pagès ♦♦ 14k
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What's the recommended way to overwrite the seqinfo of a GRanges?
rtracklayer granges import.bw seqinfo bigwigfile written 3 months ago by maltethodberg • 110 • updated 3 months ago by Michael Lawrence ♦ 11k
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How to set track attributes in rtracklayer
rtracklayer browserview browsersession written 3 months ago by foehn • 60 • updated 3 months ago by Michael Lawrence ♦ 11k
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Change sign from Granges scores to visualize negative strand data
rtracklayer granges written 4 months ago by ferbecneu • 0 • updated 4 months ago by James W. MacDonald ♦ 50k
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How to filter gff based on certain gene list in rtracklayer?
rtracklayer gff filter written 4 months ago by alslonik • 0 • updated 4 months ago by Michael Lawrence ♦ 11k
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Bug in rtracklayer::import of amino acid fasta sequences
biostrings rtracklayer fasta import written 4 months ago by k.vitting.seerup • 90 • updated 4 months ago by Michael Lawrence ♦ 11k
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rtracklayer BigBed format
rtracklayer ngs bigbed written 5 months ago by foehn • 60 • updated 5 months ago by Michael Lawrence ♦ 11k
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Install rtracklayer with the Error undefined symbol: OPENSSL_init_ssl (system Centos7.3 R3.5.1 openssl-1.1.1)
rtracklayer software error bioconductor openssl written 6 months ago by ruan_wei_dong • 0
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rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer liftover export.bw written 6 months ago by ang • 20 • updated 6 months ago by Michael Lawrence ♦ 11k
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340
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How to convert bedgraph to wig
rtracklayer genomicranges written 6 months ago by ferbecneu • 0 • updated 6 months ago by Michael Lawrence ♦ 11k
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rtracklayer cannot export empty BED file
rtracklayer genomicranges bed written 7 months ago by foehn • 60 • updated 7 months ago by Michael Lawrence ♦ 11k
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browseGenome with Shiny
rtracklayer shiny browsegenome written 8 months ago by vivek82 • 0 • updated 8 months ago by Michael Lawrence ♦ 11k
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converting a fasta file to .2bit format
biostrings rtracklayer written 8 months ago by saripalligautam86 • 10 • updated 8 months ago by Hervé Pagès ♦♦ 14k
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rtracklayer export bedGraph cannot be loaded into UCSC
rtracklayer written 9 months ago by Nicolas Servant • 230 • updated 9 months ago by Michael Lawrence ♦ 11k
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1
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264
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Import Chain - Cannot Import Chain File
rtracklayer written 10 months ago by kipperf • 0 • updated 10 months ago by Michael Lawrence ♦ 11k
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175
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motifs order on importing the motifs from bigWig file
rtracklayer R data import written 10 months ago by stefan.dvoretskii • 0 • updated 10 months ago by Michael Lawrence ♦ 11k
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makeTxdbFromUCSC fails to download
rtracklayer genomicfeatures maketxdbpackagefromucsc written 11 months ago by lalchungnungabt17 • 0 • updated 11 months ago by James W. MacDonald ♦ 50k
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Can't install rtracklayer - make: *** [ucsc/os.o] Error 1
rtracklayer written 12 months ago by creasyt • 0
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Issue with UCSC and rtracklayer: 'names' attribute [210] must be the same length as the vector [209]
rtracklayer ucsc ensgene written 13 months ago by chrisamiller • 0 • updated 13 months ago by max • 10
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rtracklayer::liftOver parameters (minMatch)
rtracklayer parameters liftover minmatch written 14 months ago by Nik dAK • 10 • updated 14 months ago by Michael Lawrence ♦ 11k
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291
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rtracklayer colorByStrand - is it possible to add quotes?
rtracklayer written 14 months ago by Janet Young • 730
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241
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import bed file with track line fails
rtracklayer written 15 months ago by cbaribault • 0 • updated 15 months ago by Michael Lawrence ♦ 11k
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2
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240
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rtracklayer demo bug
rtracklayer written 15 months ago by felix.ernst • 0
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Gviz IdeogramTrack fails with Error: failed to load HTTP resource
rtracklayer gviz http gviz-package written 16 months ago by enricoferrero • 570
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seqnames versus chrom
rtracklayer genomeinfodb biocgen written 17 months ago by felix.ernst • 0 • updated 17 months ago by Michael Lawrence ♦ 11k
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