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25
votes
7
answers
1.2k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 5 months ago by Ramiro Magno • 60 • updated 6 days ago by aina.jene • 0
3
votes
1
answer
40
views
1
answer
Import gff from character?
rtracklayer gff import.gff3 gtf import written 15 days ago by Marlin • 20 • updated 15 days ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
54
views
0
answers
why merged paired end reads still have strand infomation?
dnaseq rtracklayer paired-end reads written 24 days ago by zwfanwz678 • 0
0
votes
0
answers
43
views
0
answers
How to generate CpG island Unmasked.bed file format for finding CpG island shores and shelves?
annotation rtracklayer genomes homo.sapiens bioconductor written 27 days ago by sivabala76 • 0
0
votes
0
answers
94
views
0
answers
Exporting a GenomicRanges object as GTF/GFF file
rtracklayer genomicranges gff export gtf written 5 weeks ago by rubi • 70
2
votes
4
answers
254
views
4
answers
"minfi" loading problem because of couldn't "bumphunter" load
rtracklayer minfi bumphunter loading error written 11 weeks ago by juan-pablo.cerapio-arroyo • 10 • updated 8 weeks ago by nilan666 • 0
3
votes
2
answers
130
views
2
answers
mm10 phastCons data for use with ATACseqQC
bsgenome rtracklayer phastcons atacseqqc written 9 weeks ago by crysis405 • 10 • updated 9 weeks ago by Ou, Jianhong • 990
2
votes
1
answer
138
views
1
answer
rtracklayer::import.bed does not close connections.
rtracklayer written 12 weeks ago by Charles Plessy • 20 • updated 12 weeks ago by Michael Lawrence ♦ 9.3k
3
votes
1
answer
219
views
1
answer
rtracklayer import.gff3 function no longer working in R 3.4
rtracklayer gff import.gff3 written 3 months ago by Keith Hughitt • 90 • updated 3 months ago by Martin Morgan ♦♦ 20k
2
votes
1
answer
135
views
1
answer
rtracklayer: how to export gff file with gene names included?
rtracklayer gff written 4 months ago by Jon Bråte • 130 • updated 4 months ago by Michael Lawrence ♦ 9.3k
0
votes
0
answers
160
views
0
answers
Accessing the BigWig files from the web
rtracklayer written 4 months ago by Mustafa ABUELQUMSAN • 0
2
votes
1
answer
137
views
1
answer
Why export of empty GRanges to GFF fails?
rtracklayer written 4 months ago by jiri.hon • 0 • updated 4 months ago by Michael Lawrence ♦ 9.3k
0
votes
2
answers
431
views
2
answers
browseGenome rtracklayer, save / export UCSC genome browser image e.g. as pdf
rtracklayer save file ucsc browsegenome image written 2.3 years ago by James Perkins • 60 • updated 5 months ago by maximilianh • 10
0
votes
2
answers
332
views
2
answers
rtracklayer redistributes UCSC source without the original license?
rtracklayer written 19 months ago by mdshw5 • 0 • updated 5 months ago by maximilianh • 10
2
votes
1
answer
189
views
1
answer
rtracklayer: how to view coordinates that failed liftover?
rtracklayer written 6 months ago by chang02_23 • 20 • updated 6 months ago by Michael Lawrence ♦ 9.3k
3
votes
1
answer
164
views
1
answer
Long elapsed time using `import.gff3` with a toy example
rtracklayer import.gff3 written 8 months ago by Marlin • 20 • updated 8 months ago by Martin Morgan ♦♦ 20k
2
votes
1
answer
207
views
1
answer
Strange first_time object in rtracklayer import
rtracklayer bigwig import written 8 months ago by zx8754 • 10 • updated 8 months ago by Michael Lawrence ♦ 9.3k
1
vote
1
answer
192
views
1
answer
rtracklayer - export.bw bug
rtracklayer bigwig export.bw written 9 months ago by story.benjamin • 0 • updated 9 months ago by Michael Lawrence ♦ 9.3k
3
votes
1
answer
180
views
1
answer
does import.bw with the selection argument take into account strand?
rtracklayer import.bw written 9 months ago by maltethodberg • 30 • updated 9 months ago by Michael Lawrence ♦ 9.3k
3
votes
1
answer
211
views
1
answer
How to extract transcripts from Txdb with length >100
rtracklayer genomicfeatures written 9 months ago by alexandr.gopanenko • 20 • updated 9 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
173
views
0
answers
Inconsistent Missing Values When Importing GFF3
rtracklayer na written 10 months ago by Dario Strbenac • 1.3k
1
vote
1
answer
391
views
1
answer
UCSC web service API
rtracklayer txdb.hsapiens.ucsc.hg19.knowngene written 12 months ago by Asma rabe • 290 • updated 12 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
243
views
1
answer
"rtracklayer" compilation error
rtracklayer written 12 months ago by ghk • 0 • updated 12 months ago by Mike Smith • 1.9k
0
votes
1
answer
1.3k
views
1
answer
Rtracklayer not able to set session genome to mm9 using US server. hg19 and european server are working
rtracklayer mm9 ucsc written 2.2 years ago by krijgerp • 0 • updated 12 months ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
641
views
2
answers
bigBed support in rtracklayer
rtracklayer written 4.6 years ago by Tim Triche • 4.2k • updated 13 months ago by koneill • 30
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