Showing: sc3reset
1
vote
1
answer
158
views
1
answer
number of cell clusters in scRNA-seq
scran scater sc3 written 5 months ago by Bogdan580 • updated 5 months ago by Aaron Lun25k
0
votes
1
answer
171
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1
answer
4
votes
1
answer
291
views
1
answer
Using SC3 with batch corrected MNN values
scran scater sc3 scrna-seq batch correction written 8 months ago by hamza_karakurt30 • updated 8 months ago by Vladimir Kiselev150
0
votes
1
answer
185
views
1
answer
error running sc3_plot_de_genes in SC3 R package
sc3 written 9 months ago by weiqiao10290 • updated 9 months ago by Vladimir Kiselev150
0
votes
1
answer
280
views
1
answer
SC3 how to customize plots ?
plot heatmap marker sc3 consensus written 12 months ago by shaktirielland0 • updated 11 months ago by Vladimir Kiselev150
0
votes
1
answer
268
views
1
answer
Failure to cluster SC3
sc3 written 14 months ago by jhopkins0 • updated 14 months ago by Vladimir Kiselev150
1
vote
1
answer
233
views
1
answer
A question about log_transformed
sc3 written 17 months ago by liushang0 • updated 17 months ago by James W. MacDonald52k
0
votes
1
answer
266
views
1
answer
How can I show certain gene's expression in clusters by sc3
sc3 written 18 months ago by qq14934380600 • updated 18 months ago by Vladimir Kiselev150
1
vote
1
answer
312
views
1
answer
Is there a way to pull out the stability index matrix from the SC3 object?
sc3 written 22 months ago by yingzi.zhang10 • updated 22 months ago by Vladimir Kiselev150
0
votes
1
answer
470
views
1
answer
SC3 Package: marker genes and normal genes obtained from featureData
sc3 written 24 months ago by angela.ubn0 • updated 23 months ago by Vladimir Kiselev150
1
vote
1
answer
571
views
1
answer
Batch effect removal before SC3?
batch effect removebatcheffect sc3 written 2.0 years ago by muad.abdelhay10 • updated 2.0 years ago by Vladimir Kiselev150
1
vote
2
answers
765
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 2.1 years ago by alexandriapinto110 • updated 2.0 years ago by Vladimir Kiselev150
5
votes
2
answers
1.7k
views
2
answers
Raw count data for SC3 and SingleCellExperiment set problem
scater sc3 singlecellexperiment written 2.1 years ago by chengyuzou10 • updated 2.1 years ago by Vladimir Kiselev150
4
votes
1
answer
576
views
1
answer
SC3 gene clusters
single cell tutorial single-cell sc3 written 2.1 years ago by ahmed.elewa20 • updated 2.1 years ago by Martin Morgan ♦♦ 24k
1
vote
1
answer
736
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 2.3 years ago by rmf10 • updated 2.3 years ago by Vladimir Kiselev150
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votes
1
answer
1.6k
views
1
answer
Import .mtx file in R
sc3 written 2.5 years ago by suman705320 • updated 2.5 years ago by Vladimir Kiselev150
4
votes
1
answer
548
views
1
answer
sc3_plot_expression, colour labels
single-cell sc3 written 2.5 years ago by cfustero20 • updated 2.5 years ago by Vladimir Kiselev150
3
votes
1
answer
515
views
1
answer
Sharing SC3_interactive results
shiny single-cell sc3 written 2.6 years ago by cfustero20 • updated 2.6 years ago by Vladimir Kiselev150
4
votes
3
answers
895
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 2.8 years ago by Assa Yeroslaviz1.4k • updated 2.8 years ago by Vladimir Kiselev150
2
votes
1
answer
791
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 2.8 years ago by Assa Yeroslaviz1.4k • updated 2.8 years ago by Vladimir Kiselev150
3
votes
1
answer
682
views
1
answer
SC3 tutorial error
sc3 written 3.1 years ago by Jenn20 • updated 3.1 years ago by Vladimir Kiselev150
3
votes
1
answer
672
views
1
answer
SC3 with latent variable corrected counts
single cell sc3 written 3.1 years ago by Mark10 • updated 3.1 years ago by Vladimir Kiselev150
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