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Comment: makeContrastsDream for Interaction by abadgerw • 0
Thank you! I will try this out.
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…
Comment: ANOVA like approach of edgeR by Gordon Smyth 52k
To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …
Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0
Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…
Comment: ANOVA like approach of edgeR by Talip ▴ 10
I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…
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Comment: makeContrastsDream for Interaction
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
Answer: ANOVA like approach of edgeR
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