Showing: shortread • reset
Search
12
votes
5
answers
2.8k
views
11 follow
5
answers
Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
shortread dependency package installation written 13 months ago by joseph.elsherbini • 50 • updated 15 days ago by January Weiner • 230
12
votes
3
answers
159
views
5 follow
3
answers
No method for coercing this S4 class to a vector, as trying to import my own data rather than using SRA in the workflow RnaSeqGeneEdgeRQL
shortread rsubread rnaseqgeneedgerql written 10 weeks ago by Raito92 • 40 • updated 10 weeks ago by Aspie96 • 60
0
votes
2
answers
646
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 10.4 years ago by Daniel Brewer • 1.9k • updated 5 months ago by Bioconductor Community ♦♦ 0
1
vote
1
answer
234
views
1
answer
error: incorrect number of fields (1) input.bam:1
shortread readaligned written 6 months ago by kspata • 10 • updated 6 months ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
216
views
1
answer
Remove reads from raw fastq
biostrings shortread written 7 months ago by ferbecneu • 0 • updated 7 months ago by Gordon Smyth ♦ 37k
0
votes
2
answers
227
views
2
answers
Retrieving specific sequences from a fastq
biostrings shortread written 8 months ago by ferbecneu • 0
0
votes
1
answer
259
views
1
answer
Should I use legacy functions in ShortRead package?
shortread written 15 months ago by Frocha • 10 • updated 15 months ago by Martin Morgan ♦♦ 23k
4
votes
1
answer
308
views
1
answer
The ShortRead package does not handle quality score '~' (Q=93) found in PacBio fastq files
shortread fastq pacbio written 16 months ago by benjamin.j.callahan • 40 • updated 16 months ago by Martin Morgan ♦♦ 23k
4
votes
2
answers
437
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 16 months ago by jfgout • 10 • updated 16 months ago by Dario Strbenac • 1.4k
1
vote
1
answer
334
views
1
answer
bplapply with ShortRead functions
shortread biocparallel written 16 months ago by Vivek.b • 100 • updated 16 months ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
360
views
1
answer
Reading fastq file after narrowing sequences
shortread fastqstreamer written 19 months ago by ioannis.vardaxis • 30
0
votes
2
answers
563
views
2
answers
readFastq error reading Nanopore fastq
shortread written 21 months ago by kamal.fartiyal84 • 10
5
votes
1
answer
577
views
1
answer
strsplit method for DNAStringSet objects
biostrings shortread written 2.2 years ago by jma1991 • 30 • updated 2.2 years ago by Hervé Pagès ♦♦ 14k
0
votes
1
answer
1.1k
views
1
answer
How to check that the reads in two fastq files are in the same order
shortread fastq written 2.5 years ago by Frocha • 10 • updated 2.5 years ago by James W. MacDonald ♦ 50k
1
vote
2
answers
522
views
2
answers
FastqStreamer and qualitytype
shortread written 2.8 years ago by David • 860
1
vote
1
answer
530
views
1
answer
Shortread convert S4 vector qualityScore to vector
shortread written 2.8 years ago by Radek • 60 • updated 2.8 years ago by Martin Morgan ♦♦ 23k
0
votes
0
answers
559
views
0
answers
make: *** [ShortRead.so] Error 1
shortread written 3.0 years ago by mictadlo • 0 • updated 3.0 years ago by Martin Morgan ♦♦ 23k
0
votes
1
answer
483
views
1
answer
Error Raised When Trying To Use pileup()
biostrings shortread hilbertvis rsamtools written 3.1 years ago by travis.m.couture • 0 • updated 3.1 years ago by Martin Morgan ♦♦ 23k
5
votes
0
answers
1.7k
views
0
answers
Tutorial: Prototyping An Analysis Pipeline For Lexogen 3'-UTR RNA-seq In Bioconductor
shortread rsubread tutorial ensembldb written 3.2 years ago by phil.chapman • 140
1
vote
1
answer
746
views
1
answer
ShortRead quality assessment functions (qa and qa2) from ShortReadQ object
shortread written 3.2 years ago by phil.chapman • 140 • updated 3.2 years ago by Martin Morgan ♦♦ 23k
5
votes
1
answer
784
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 3.2 years ago by chapmandu2 • 20 • updated 3.2 years ago by Martin Morgan ♦♦ 23k
0
votes
0
answers
656
views
0
answers
Error with qa() in package ShortRead when checking for adapter contamination.
shortread written 3.3 years ago by Diego Diez • 730
0
votes
0
answers
592
views
0
answers
ShortRead::FastqStreamer() causes segfault
shortread segfault written 3.5 years ago by Watal M. Iwasaki • 10
4
votes
1
answer
1.0k
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 3.6 years ago by pavitrarc • 20 • updated 3.6 years ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
1.2k
views
1
answer
Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing biostrings shortread written 3.6 years ago by steven.everman • 10 • updated 3.6 years ago by Martin Morgan ♦♦ 23k
<prev • 85 results • page 1 of 4 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • Chicago, IL, USA, just now
  • Australia, 3 minutes ago
  • Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia, 27 minutes ago
  • United States, 37 minutes ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 181 users visited in the last hour