Showing: shortread • reset
Search
0
votes
2
answers
555
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 10.0 years ago by Daniel Brewer • 1.9k • updated 14 days ago by Bioconductor Community ♦♦ 0
1
vote
1
answer
157
views
1
answer
error: incorrect number of fields (1) input.bam:1
shortread readaligned written 5 weeks ago by kspata • 10 • updated 5 weeks ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
123
views
1
answer
Remove reads from raw fastq
biostrings shortread written 11 weeks ago by ferbecneu • 0 • updated 11 weeks ago by Gordon Smyth ♦ 36k
0
votes
2
answers
135
views
2
answers
Retrieving specific sequences from a fastq
biostrings shortread written 3 months ago by ferbecneu • 0
8
votes
3
answers
1.6k
views
7 follow
3
answers
Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
shortread dependency package installation written 8 months ago by joseph.elsherbini • 30 • updated 5 months ago by olavur • 10
0
votes
1
answer
183
views
1
answer
Should I use legacy functions in ShortRead package?
shortread written 10 months ago by Frocha • 10 • updated 10 months ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
233
views
1
answer
The ShortRead package does not handle quality score '~' (Q=93) found in PacBio fastq files
shortread fastq pacbio written 11 months ago by benjamin.j.callahan • 40 • updated 11 months ago by Martin Morgan ♦♦ 22k
4
votes
2
answers
345
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 11 months ago by jfgout • 10 • updated 11 months ago by Dario Strbenac • 1.4k
1
vote
1
answer
253
views
1
answer
bplapply with ShortRead functions
shortread biocparallel written 11 months ago by Vivek.b • 90 • updated 11 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
283
views
1
answer
Reading fastq file after narrowing sequences
shortread fastqstreamer written 14 months ago by ioannis.vardaxis • 20
0
votes
2
answers
504
views
2
answers
readFastq error reading Nanopore fastq
shortread written 17 months ago by kamal.fartiyal84 • 10
5
votes
1
answer
468
views
1
answer
strsplit method for DNAStringSet objects
biostrings shortread written 21 months ago by jma1991 • 30 • updated 21 months ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
885
views
1
answer
How to check that the reads in two fastq files are in the same order
shortread fastq written 2.1 years ago by Frocha • 10 • updated 2.1 years ago by James W. MacDonald ♦ 49k
1
vote
2
answers
468
views
2
answers
FastqStreamer and qualitytype
shortread written 2.4 years ago by David • 860
1
vote
1
answer
462
views
1
answer
Shortread convert S4 vector qualityScore to vector
shortread written 2.4 years ago by Radek • 40 • updated 2.4 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
500
views
0
answers
make: *** [ShortRead.so] Error 1
shortread written 2.6 years ago by mictadlo • 0 • updated 2.6 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
416
views
1
answer
Error Raised When Trying To Use pileup()
biostrings shortread hilbertvis rsamtools written 2.7 years ago by travis.m.couture • 0 • updated 2.7 years ago by Martin Morgan ♦♦ 22k
5
votes
0
answers
1.5k
views
0
answers
Tutorial: Prototyping An Analysis Pipeline For Lexogen 3'-UTR RNA-seq In Bioconductor
shortread rsubread tutorial ensembldb written 2.8 years ago by phil.chapman • 140
1
vote
1
answer
671
views
1
answer
ShortRead quality assessment functions (qa and qa2) from ShortReadQ object
shortread written 2.8 years ago by phil.chapman • 140 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
5
votes
1
answer
687
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 2.8 years ago by chapmandu2 • 20 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
593
views
0
answers
Error with qa() in package ShortRead when checking for adapter contamination.
shortread written 2.9 years ago by Diego Diez • 730
0
votes
0
answers
531
views
0
answers
ShortRead::FastqStreamer() causes segfault
shortread segfault written 3.1 years ago by Watal M. Iwasaki • 10
4
votes
1
answer
955
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 3.2 years ago by pavitrarc • 20 • updated 3.2 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
1.1k
views
1
answer
Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing biostrings shortread written 3.2 years ago by steven.everman • 10 • updated 3.2 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
615
views
0
answers
ShortRead Error in slot(object, ".srlist")
shortread software error written 3.3 years ago by sbrown36 • 0 • updated 3.3 years ago by Martin Morgan ♦♦ 22k
<prev • 84 results • page 1 of 4 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • United States, 4 minutes ago
  • Dana-Farber Cancer Institute, Boston, USA, 6 minutes ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 329 users visited in the last hour