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5
votes
1
answer
149
views
1
answer
strsplit method for DNAStringSet objects
biostrings shortread written 10 weeks ago by jma1991 • 20 • updated 10 weeks ago by Hervé Pagès ♦♦ 12k
0
votes
1
answer
186
views
1
answer
How to check that the reads in two fastq files are in the same order
shortread fastq written 6 months ago by Frocha • 0 • updated 6 months ago by James W. MacDonald ♦ 43k
1
vote
2
answers
185
views
2
answers
FastqStreamer and qualitytype
shortread written 9 months ago by David • 860
1
vote
1
answer
190
views
1
answer
Shortread convert S4 vector qualityScore to vector
shortread written 10 months ago by Radek • 40 • updated 10 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
229
views
0
answers
make: *** [ShortRead.so] Error 1
shortread written 12 months ago by mictadlo • 0 • updated 12 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
223
views
1
answer
Error Raised When Trying To Use pileup()
biostrings shortread hilbertvis rsamtools written 13 months ago by travis.m.couture • 0 • updated 13 months ago by Martin Morgan ♦♦ 20k
4
votes
0
answers
755
views
0
answers
Tutorial: Prototyping An Analysis Pipeline For Lexogen 3'-UTR RNA-seq In Bioconductor
shortread rsubread tutorial ensembldb written 14 months ago by phil.chapman • 120
1
vote
1
answer
317
views
1
answer
ShortRead quality assessment functions (qa and qa2) from ShortReadQ object
shortread written 14 months ago by phil.chapman • 120 • updated 14 months ago by Martin Morgan ♦♦ 20k
5
votes
1
answer
300
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 14 months ago by chapmandu2 • 20 • updated 14 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
310
views
0
answers
Error with qa() in package ShortRead when checking for adapter contamination.
shortread written 16 months ago by Diego Diez • 700
0
votes
0
answers
266
views
0
answers
ShortRead::FastqStreamer() causes segfault
shortread segfault written 18 months ago by Watal M. Iwasaki • 10
4
votes
1
answer
583
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 19 months ago by florence_craye • 20 • updated 19 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
379
views
1
answer
Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing biostrings shortread written 19 months ago by steven.everman • 10 • updated 19 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
417
views
0
answers
ShortRead Error in slot(object, ".srlist")
shortread software error written 20 months ago by sbrown36 • 0 • updated 20 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
386
views
1
answer
Why I'm getting an error when using ShortRead package's FastqStreamerList function?
shortread fastqsteamerlist written 22 months ago by simonas.juzenas • 10 • updated 22 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
628
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 24 months ago by Arne Muller • 20 • updated 24 months ago by Martin Morgan ♦♦ 20k
1
vote
6
answers
679
views
6
answers
ShortRead with large fastq files
shortread written 2.1 years ago by danova_fr • 20
0
votes
2
answers
343
views
2
answers
gcContent error with shortread
shortread written 2.1 years ago by danova_fr • 20
2
votes
3
answers
394
views
3
answers
ShortRead trim sequence at specific position
shortread fastq written 2.2 years ago by danova_fr • 20
5
votes
1
answer
573
views
1
answer
Trimming with ShortRead
shortread written 2.2 years ago by cookie • 20 • updated 2.2 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
324
views
2
answers
ShortRead summary stats
shortread illumina written 2.3 years ago by danova_fr • 20
0
votes
4
answers
1.5k
views
4
answers
convert fastq file to fasta using shortread package
shortread illumina written 2.3 years ago by kelvinfrog75 • 0 • updated 2.3 years ago by Martin Morgan ♦♦ 20k
3
votes
1
answer
776
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 2.4 years ago by francesca.defilippis • 40 • updated 2.4 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
617
views
1
answer
ShortRead- how to edit the id in a fastq
shortread written 2.4 years ago by newmanss • 0 • updated 2.4 years ago by Valerie Obenchain ♦♦ 6.1k
0
votes
2
answers
505
views
2
answers
Affect ShortRead readAligned behavior with ScanBamParam's reverseComplement parameter
shortread readaligned reversecomplement scanbamparam written 2.4 years ago by jdavison • 10
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