5
votes
1
answer
181
views
1
answer
strsplit method for DNAStringSet objects
biostrings shortread written 4 months ago by jma199120 • updated 4 months ago by Hervé Pagès ♦♦ 12k
0
votes
1
answer
218
views
1
answer
How to check that the reads in two fastq files are in the same order
shortread fastq written 8 months ago by Frocha0 • updated 8 months ago by James W. MacDonald44k
1
vote
2
answers
221
views
2
answers
FastqStreamer and qualitytype
shortread written 11 months ago by David860
1
vote
1
answer
229
views
1
answer
Shortread convert S4 vector qualityScore to vector
shortread written 12 months ago by Radek40 • updated 12 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
258
views
0
answers
make: *** [ShortRead.so] Error 1
shortread written 14 months ago by mictadlo0 • updated 14 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
246
views
1
answer
Error Raised When Trying To Use pileup()
biostrings shortread hilbertvis rsamtools written 15 months ago by travis.m.couture0 • updated 15 months ago by Martin Morgan ♦♦ 20k
4
votes
0
answers
838
views
0
answers
1
vote
1
answer
377
views
1
answer
ShortRead quality assessment functions (qa and qa2) from ShortReadQ object
shortread written 16 months ago by phil.chapman120 • updated 16 months ago by Martin Morgan ♦♦ 20k
5
votes
1
answer
338
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 16 months ago by chapmandu220 • updated 16 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
339
views
0
answers
0
votes
0
answers
296
views
0
answers
4
votes
1
answer
622
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 21 months ago by pavitrarc20 • updated 21 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
436
views
1
answer
0
votes
0
answers
442
views
0
answers
ShortRead Error in slot(object, ".srlist")
shortread software error written 22 months ago by sbrown360 • updated 22 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
416
views
1
answer
1
vote
1
answer
671
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 2.1 years ago by Arne Muller20 • updated 2.1 years ago by Martin Morgan ♦♦ 20k
1
vote
6
answers
723
views
6
answers
ShortRead with large fastq files
shortread written 2.2 years ago by danova_fr20
0
votes
2
answers
372
views
2
answers
gcContent error with shortread
shortread written 2.3 years ago by danova_fr20
2
votes
3
answers
426
views
3
answers
5
votes
1
answer
612
views
1
answer
Trimming with ShortRead
shortread written 2.4 years ago by cookie20 • updated 2.4 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
356
views
2
answers
ShortRead summary stats
shortread illumina written 2.4 years ago by danova_fr20
0
votes
4
answers
1.6k
views
4
answers
convert fastq file to fasta using shortread package
shortread illumina written 2.4 years ago by kelvinfrog750 • updated 2.4 years ago by Martin Morgan ♦♦ 20k
3
votes
1
answer
828
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 2.5 years ago by francesca.defilippis40 • updated 2.5 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
671
views
1
answer
ShortRead- how to edit the id in a fastq
shortread written 2.6 years ago by newmanss0 • updated 2.6 years ago by Valerie Obenchain ♦♦ 6.2k
0
votes
2
answers
542
views
2
answers
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