Showing: single-cellreset
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How to identify real cells in 10X RNA-seq ?
single-cell dropletutils 10x cell calling cellranger written 8 months ago by xingxd160 • updated 8 months ago by Aaron Lun25k
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[MnnCorrect] Remove batch effects but keep condition effects
rnaseq scran single-cell mnncorrect written 11 months ago by John Reid10 • updated 11 months ago by Aaron Lun25k
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Error of makeTechTrend() of Scran
scran single-cell seq.default written 15 months ago by Guangshuai Jia0 • updated 15 months ago by Aaron Lun25k
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Adjust number of clusters with scran/buildSNNGraph
scran single-cell buildsnngraph cluster_walktrap written 15 months ago by tobi0 • updated 15 months ago by Aaron Lun25k
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rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 18 months ago by MengChun Tseng10 • updated 16 months ago by Martin Morgan ♦♦ 24k
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MAST: testing differential expression with a nested factorial design
rna-seq single-cell mast written 19 months ago by khandarius20 • updated 19 months ago by Andrew_McDavid190
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Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 2.5 years ago by CodeAway50 • updated 19 months ago by angela.ubn0
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SC3 gene clusters
single cell tutorial single-cell sc3 written 2.1 years ago by ahmed.elewa20 • updated 2.1 years ago by Martin Morgan ♦♦ 24k
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How do you test a contrast in MAST?
differential gene expression single-cell mast written 2.2 years ago by Shian Su20 • updated 2.2 years ago by Andrew_McDavid190
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Error when merging SCESet objects
single-cell scater written 2.2 years ago by NathL0 • updated 2.2 years ago by Aaron Lun25k
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Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 2.2 years ago by rmf10 • updated 2.2 years ago by Vladimir Kiselev150
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Scran functions not found
scran single-cell written 2.2 years ago by alva.james0 • updated 2.2 years ago by Aaron Lun25k
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