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GenomeInfoDb’ could not be loaded or installed
GenomeInfoDbData
2 days ago • updated 32 minutes ago
ettore64
• 0
0
votes
1
reply
15
views
bioconductor.org not reachable from EU region
error
http429
server
updated 1 hour ago by
shepherl
2.6k • written 2 hours ago by
ashu.upadhyay2206
• 0
1
vote
6
replies
54
views
The correlation between normalized counts and TPM based on 2-factor analysis by DESeq2
DESeq2
RNASeq
5 hours ago • updated 23 minutes ago
hequn
• 0
0
votes
1
reply
24
views
DESeq2 coefficient names
resultsNames
DESeq2
coefficient
updated 4 hours ago by
Michael Love
32k • written 8 hours ago by
jkhudyakov
• 0
0
votes
1
reply
19
views
Ensemble site connection error
biomaRt
updated 4 hours ago by
Kevin Blighe
2.8k • written 12 hours ago by
Makoto
• 0
0
votes
1
reply
25
views
Deseq2 - removing batch effect
BatchEffect
DESeq2
updated 4 hours ago by
Kevin Blighe
2.8k • written 8 hours ago by
vinisha
• 0
0
votes
0
replies
9
views
EdgeR glmLRT vs glmQLFTest
edgeR
DifferentialExpression
4 hours ago
Marianna
• 0
7 results • Page
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Comment: The correlation between normalized counts and TPM based on 2-factor analysis by
by
hequn
• 0
Thank you very much for your reply. I agree with you, what I do not understand is that the correlation by one-factor mode seems good but no…
Answer: GenomeInfoDb’ could not be loaded or installed
by
ettore64
• 0
Well, it looks like it was a macos system issue. I upgraded macos Sierra to High Sierra and could install the minfi packages (including Gen…
Comment: bioconductor.org not reachable from EU region
by
shepherl
2.6k
You have been previously able to install and access? To help debug may I ask the IP address of the machine you are using for access?
Comment: The correlation between normalized counts and TPM based on 2-factor analysis by
by
hequn
• 0
Thank you so much for you response. TPM is calculated by the company, I do not know which software they used to generate them. I had used…
Comment: Sorting columns in pheatmap
by
Linda
• 0
Thank you Chris that is really helpful. Now I have a situation whereby the columns are organised how I would like. However, it appears to…
Votes
Comment: Sorting columns in pheatmap
Comment: DESeq2 unmix function
Answer: DESeq2 unmix function
Comment: The correlation between normalized counts and TPM based on 2-factor analysis by
Answer: diffbind installation through Conda fails
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