systempiper Posts

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systemARGS not found

systempiper written 8 days ago by kimberly.dickson • 0

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105

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error: NA counts not permitted

edger systempiper rna-seq written 4 months ago by clarisbaby • 0 • updated 4 months ago by Aaron Lun • 20k

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152

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What R version does systemPipeR runs

R systempiper batchjobs written 11 months ago by tarun2 • 0 • updated 11 months ago by Thomas Girke • 1.6k

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266

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Why all of the logFC are NA in my edgeDF2

edger R systempiper written 17 months ago by xuertowong • 0

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532

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SystemPipeR: alignments with ambiguous pairing were dumped.

rnaseq R systempiper summarizeoverlaps tophat written 21 months ago by abass.conteh • 0 • updated 21 months ago by Thomas Girke • 1.6k

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463

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Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work

systempiper run_edger written 22 months ago by alexandr.gopanenko • 20 • updated 22 months ago by Thomas Girke • 1.6k

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698

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DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order

deseq2 systempiper tutorial written 2.1 years ago by musa • 10

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395

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SystemPipeR GO term enrichment analysis - filterDEG

systempiper go term written 2.2 years ago by A Gossner • 50

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608

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error when using seeFastqPlot

software error systempiper ggplot2 seefastqplot geom_histogram written 2.6 years ago by setarosd • 0 • updated 2.6 years ago by Thomas Girke • 1.6k

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618

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systemPipeR with DESeq2

deseq2 systempiper written 3.8 years ago by Ugo Borello • 340