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14
votes
0
answers
167
views
0
answers
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper written 13 days ago by jsalsager • 40
0
votes
0
answers
115
views
0
answers
runCommandline error - bash: module: command not found
systempiper runcommandline bash written 10 weeks ago by rj.innet • 0
0
votes
0
answers
108
views
0
answers
Problem running (loading) systemPipeR package after downloading
rnaseq systempiper written 3 months ago by rj.innet • 0
0
votes
0
answers
59
views
0
answers
systemARGS not found
systempiper written 4 months ago by kimberly.dickson • 0
0
votes
1
answer
167
views
1
answer
error: NA counts not permitted
edger systempiper rna-seq written 8 months ago by clarisbaby • 0 • updated 8 months ago by Aaron Lun • 21k
0
votes
1
answer
205
views
1
answer
What R version does systemPipeR runs
R systempiper batchjobs written 14 months ago by tarun2 • 0 • updated 14 months ago by Thomas Girke • 1.7k
0
votes
0
answers
310
views
0
answers
Why all of the logFC are NA in my edgeDF2
edger R systempiper written 21 months ago by xuertowong • 0
2
votes
2
answers
595
views
2
answers
SystemPipeR: alignments with ambiguous pairing were dumped.
rnaseq R systempiper summarizeoverlaps tophat written 2.1 years ago by abass.conteh • 0 • updated 2.1 years ago by Thomas Girke • 1.7k
1
vote
1
answer
512
views
1
answer
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper run_edger written 2.2 years ago by alexandr.gopanenko • 20 • updated 2.2 years ago by Thomas Girke • 1.7k
0
votes
2
answers
866
views
2
answers
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2 systempiper tutorial written 2.4 years ago by musa • 10
0
votes
1
answer
442
views
1
answer
SystemPipeR GO term enrichment analysis - filterDEG
systempiper go term written 2.5 years ago by A Gossner • 50
0
votes
1
answer
678
views
1
answer
error when using seeFastqPlot
software error systempiper ggplot2 seefastqplot geom_histogram written 2.9 years ago by setarosd • 0 • updated 2.9 years ago by Thomas Girke • 1.7k
0
votes
3
answers
665
views
3
answers
systemPipeR with DESeq2
deseq2 systempiper written 4.1 years ago by Ugo Borello • 340
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