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1
answer
47
views
1
answer
selection of interesting genes for a KS test in TopGO
topgo written 1 day ago by l.santiago • 0 • updated 15 hours ago by Lluís R • 270
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51
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Filtering Tophat/cufflinks data for GSEA with topGO
topgo tophat kolmogorov-smirnov test written 5 weeks ago by aaronrosenstein • 0 • updated 5 weeks ago by James W. MacDonald ♦ 44k
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336
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1
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How to get genes corresponding to a GO term from topGOData object?
microarray topgo gene ontology R written 16 months ago by rishi.dasroy • 10 • updated 6 weeks ago by mt1022 • 0
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191
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topGO error using annFUN.org
go topgo software error written 7 weeks ago by Florian Pauler • 0
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2
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217
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2
answers
topGO gene names/ensembl IDs
biomart topgo deseq2 gene ontology written 3 months ago by krc3004 • 10 • updated 3 months ago by Lluís R • 270
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186
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How to update the list of genes mapped to GO terms in the topGO object?
go topgo written 4 months ago by colaneri • 30
1
vote
1
answer
190
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1
answer
Error when using the showGroupDensity function in topGO
topgo written 5 months ago by colaneri • 30 • updated 5 months ago by James W. MacDonald ♦ 44k
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0
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199
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understanding topGO enrichment
topgo written 5 months ago by michael.steffen • 20
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1
answer
185
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1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 5 months ago by predeus • 0 • updated 5 months ago by Lluís R • 270
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1
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195
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1
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How are feasible genes determined in topGO
topgo written 5 months ago by michael.steffen • 20 • updated 5 months ago by James W. MacDonald ♦ 44k
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160
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topGO plotting options: It is possible to control the number of nodes in the DAG plot according with their p values?
topgo dag written 5 months ago by colaneri • 30
5
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1
answer
242
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1
answer
topGO under-representation table
go topgo written 6 months ago by beachboarder900 • 40
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0
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191
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Problem when using topGO for RNAseq data: The number of annotated genes for GO terms changes according to the number of genes in the gene-background-LIst.
rnaseq topgo gene ontolology written 5 months ago by colaneri • 30
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1
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216
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1
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clusterProlifer: plotGOgraph() error with gseGO() result
topgo clusterprofiler gsego plotgograph() written 5 months ago by cjsifuen • 0 • updated 5 months ago by Guangchuang Yu • 690
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191
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topGO: No adjacent nodes prevents BP analysis
topgo written 7 months ago by hollinew • 0
1
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1
answer
300
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5 follow
1
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topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology bioinformatics rna-seq gene set enrichment written 10 months ago by fromhj304 • 10 • updated 7 months ago by Lluís R • 270
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0
answers
151
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answers
Different geneset same p-values in topGO
topgo bug written 7 months ago by Lluís R • 270
2
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1
answer
301
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1
answer
topGO crashes with ' argument "annotationFun" is missing, with no default'
topgo bug written 8 months ago by Philip Lijnzaad • 160 • updated 8 months ago by James W. MacDonald ♦ 44k
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2
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349
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2
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clusterProfiler - interpretation of plotGOgraph
topgo clusterprofiler written 9 months ago by Jane Merlevede • 90
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0
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173
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How to use combineResults from topGO package?
topgo written 10 months ago by Lluís R • 270
1
vote
1
answer
302
views
1
answer
Pathview & topGO
go topgo pathview R written 12 months ago by cabezasdelafuented • 10 • updated 12 months ago by Luo Weijun • 1.4k
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1
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224
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1
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topgo rnaseq error
rnaseq topgo written 12 months ago by tarek.mohamed • 0
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0
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304
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topGO fro RNA-seq
rnaseq topgo written 12 months ago by tarek.mohamed • 0
0
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1
answer
185
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1
answer
TopGO Drosophila ananassae
topgo go enrichment d.ananassae written 13 months ago by koeniger • 10 • updated 13 months ago by James W. MacDonald ♦ 44k
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0
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203
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0
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TopGO Analysis of gene enrichment - enriched terms are not in the original list
topgo written 13 months ago by pninasmail • 0
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