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1
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142
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2
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topGO gene names/ensembl IDs
biomart topgo deseq2 gene ontology written 6 weeks ago by krc3004 • 10 • updated 6 weeks ago by Lluís R • 210
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137
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How to update the list of genes mapped to GO terms in the topGO object?
go topgo written 12 weeks ago by colaneri • 30
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1
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150
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1
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Error when using the showGroupDensity function in topGO
topgo written 3 months ago by colaneri • 30 • updated 3 months ago by James W. MacDonald ♦ 43k
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157
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understanding topGO enrichment
topgo written 3 months ago by michael.steffen • 20
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1
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145
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1
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topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 3 months ago by predeus • 0 • updated 3 months ago by Lluís R • 210
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1
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155
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1
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How are feasible genes determined in topGO
topgo written 3 months ago by michael.steffen • 20 • updated 3 months ago by James W. MacDonald ♦ 43k
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124
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topGO plotting options: It is possible to control the number of nodes in the DAG plot according with their p values?
topgo dag written 3 months ago by colaneri • 30
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1
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220
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1
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topGO under-representation table
go topgo written 4 months ago by beachboarder900 • 40
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124
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0
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Problem when using topGO for RNAseq data: The number of annotated genes for GO terms changes according to the number of genes in the gene-background-LIst.
rnaseq topgo gene ontolology written 3 months ago by colaneri • 30
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1
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184
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1
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clusterProlifer: plotGOgraph() error with gseGO() result
topgo clusterprofiler gsego plotgograph() written 4 months ago by cjsifuen • 0 • updated 3 months ago by Guangchuang Yu • 650
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163
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topGO: No adjacent nodes prevents BP analysis
topgo written 5 months ago by hollinew • 0
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1
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246
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5 follow
1
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topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology bioinformatics rna-seq gene set enrichment written 8 months ago by fromhj304 • 10 • updated 5 months ago by Lluís R • 210
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122
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0
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Different geneset same p-values in topGO
topgo bug written 5 months ago by Lluís R • 210
2
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1
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244
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1
answer
topGO crashes with ' argument "annotationFun" is missing, with no default'
topgo bug written 6 months ago by Philip Lijnzaad • 160 • updated 6 months ago by James W. MacDonald ♦ 43k
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2
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301
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2
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clusterProfiler - interpretation of plotGOgraph
topgo clusterprofiler written 7 months ago by Jane Merlevede • 90
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0
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150
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0
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How to use combineResults from topGO package?
topgo written 9 months ago by Lluís R • 210
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1
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261
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1
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Pathview & topGO
go topgo pathview R written 10 months ago by cabezasdelafuented • 10 • updated 10 months ago by Luo Weijun • 1.4k
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1
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183
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1
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topgo rnaseq error
rnaseq topgo written 10 months ago by tarek.mohamed • 0
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0
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262
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topGO fro RNA-seq
rnaseq topgo written 10 months ago by tarek.mohamed • 0
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1
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159
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1
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TopGO Drosophila ananassae
topgo go enrichment d.ananassae written 11 months ago by koeniger • 10 • updated 11 months ago by James W. MacDonald ♦ 43k
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185
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TopGO Analysis of gene enrichment - enriched terms are not in the original list
topgo written 11 months ago by pninasmail • 0
3
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1
answer
287
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1
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Trying to account for gene length in topGO analysis
topgo goseq deseq2 written 12 months ago by Ben Mansfeld • 0 • updated 12 months ago by Bernd Klaus • 430
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3
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270
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3
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GO annotation and gene set testing for plant dataset
annotation go topgo edger bioconductor written 13 months ago by myprogramming2016 • 0
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1
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463
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1
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Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
biomart topgo gene ontology pathway analysis goexpress written 13 months ago by Darya Vanichkina • 90 • updated 13 months ago by kevin.rue • 200
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275
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How to get genes corresponding to a GO term from topGOData object?
microarray topgo gene ontology R written 15 months ago by rishi.dasroy • 0
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