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29
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How to plot the top_GO result using GOplot?
topgo goplot written 1 day ago by peirinl • 0
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43
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Problem in genelist levels when running topGO.
topgo written 6 days ago by peirinl • 0
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1
answer
82
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1
answer
How to produce png files from printGraph
topgo written 12 days ago by mictadlo • 0 • updated 12 days ago by arendsee • 10
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1
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45
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1
answer
Error in xy.coords(x, y, xlabel, ylabel, log)
topgo svg written 14 days ago by mictadlo • 0
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0
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96
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topGO - missing value where TRUE/FALSE needed
topgo edger written 29 days ago by mictadlo • 0
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0
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200
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0
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how to build gene.pathway data.frame for non-model organism
limma topgo edger kegg dataframe written 5 weeks ago by mictadlo • 0
0
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1
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228
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1
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How to use topGO and KEGG with de-novo species
limma topgo edger kegg kegga written 5 weeks ago by mictadlo • 0 • updated 5 weeks ago by Gordon Smyth ♦ 31k
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318
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TopGO - How to return number of genes associated with each GO term?
topgo written 8 weeks ago by kleona3 • 0
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1
answer
357
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1
answer
selection of interesting genes for a KS test in TopGO
topgo written 8 weeks ago by l.santiago • 0 • updated 8 weeks ago by Lluís R • 270
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0
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82
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0
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Filtering Tophat/cufflinks data for GSEA with topGO
topgo tophat kolmogorov-smirnov test written 3 months ago by aaronrosenstein • 0 • updated 3 months ago by James W. MacDonald ♦ 44k
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1
answer
379
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1
answer
How to get genes corresponding to a GO term from topGOData object?
microarray topgo gene ontology R written 18 months ago by rishi.dasroy • 10 • updated 3 months ago by mt1022 • 0
0
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0
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260
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0
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topGO error using annFUN.org
go topgo software error written 3 months ago by Florian Pauler • 0
1
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2
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299
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2
answers
topGO gene names/ensembl IDs
biomart topgo deseq2 gene ontology written 5 months ago by krc3004 • 10 • updated 5 months ago by Lluís R • 270
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0
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231
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0
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How to update the list of genes mapped to GO terms in the topGO object?
go topgo written 6 months ago by colaneri • 30
1
vote
1
answer
219
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1
answer
Error when using the showGroupDensity function in topGO
topgo written 6 months ago by colaneri • 30 • updated 6 months ago by James W. MacDonald ♦ 44k
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0
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239
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understanding topGO enrichment
topgo written 7 months ago by michael.steffen • 20
0
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1
answer
224
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1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 7 months ago by predeus • 0 • updated 7 months ago by Lluís R • 270
0
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1
answer
244
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1
answer
How are feasible genes determined in topGO
topgo written 7 months ago by michael.steffen • 20 • updated 7 months ago by James W. MacDonald ♦ 44k
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191
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topGO plotting options: It is possible to control the number of nodes in the DAG plot according with their p values?
topgo dag written 7 months ago by colaneri • 30
5
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1
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269
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1
answer
topGO under-representation table
go topgo written 8 months ago by beachboarder900 • 40
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249
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Problem when using topGO for RNAseq data: The number of annotated genes for GO terms changes according to the number of genes in the gene-background-LIst.
rnaseq topgo gene ontolology written 7 months ago by colaneri • 30
0
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1
answer
263
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1
answer
clusterProlifer: plotGOgraph() error with gseGO() result
topgo clusterprofiler gsego plotgograph() written 7 months ago by cjsifuen • 0 • updated 7 months ago by Guangchuang Yu • 700
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0
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231
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topGO: No adjacent nodes prevents BP analysis
topgo written 9 months ago by hollinew • 0
1
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1
answer
348
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5 follow
1
answer
topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology bioinformatics rna-seq gene set enrichment written 12 months ago by fromhj304 • 10 • updated 9 months ago by Lluís R • 270
0
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0
answers
170
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0
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Different geneset same p-values in topGO
topgo bug written 9 months ago by Lluís R • 270
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