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usage of topGO after limma
microarray limma topgo written 24 days ago by I.V. Lynn • 0 • updated 24 days ago by Gordon Smyth ♦ 37k
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topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topgo annotationforge written 6 weeks ago by psutton • 0
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How to retreive topGO significant IDs of genes after enrichment test ?
topgo enrichment genes significant ids written 12 weeks ago by David ROUX • 10
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topGO: "There are no adj nodes for node"
topgo software error org.hs.eg.db written 4 months ago by natske • 10
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topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment written 4 months ago by jgg • 0 • updated 4 months ago by James W. MacDonald ♦ 49k
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topGO "invalid argument to unary operator"
topgo software error written 5 months ago by fshodan • 0 • updated 5 months ago by James W. MacDonald ♦ 49k
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topGO analysis runTest: non-numeric argument to binary operator
topgo written 6 months ago by Dave Th. • 0
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topGO: how to print GO descriptions only when using showSigOfNodes?
topgo written 7 months ago by anton.kratz • 50
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How do you specify "chip" in printGenes of TopGO for maize data
topgo printgenes written 8 months ago by Kaperuza • 0 • updated 8 months ago by James W. MacDonald ♦ 49k
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DEXUSResult as.data.frame doesn't work well if topGO is loaded
topgo dexus written 8 months ago by idavydov • 0 • updated 8 months ago by James W. MacDonald ♦ 49k
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TopGOdata Object error
topgo written 9 months ago by s1607338 • 0
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topGO enrichment analysis
topgo written 9 months ago by prakashpandey1111 • 0
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topGO: how to rettrieve (long) GO term description without abbreviating
topgo written 9 months ago by al-ash • 20
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TopGO ks test using a score different from p-value
topgo go enrichment kolmogorov-smirnov test score ks written 9 months ago by eagomezc • 0 • updated 9 months ago by Lluís Revilla Sancho • 460
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topGO (Version: 2.30.1) - weight01 algorithm
rnaseq topgo gene ontology pathway analysis deg written 13 months ago by digrigor • 10
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Using topGO for GO Enrichment on methylation markers (Illumina 450k)
topgo illuminahumanmethylation450k.db written 13 months ago by dusan.petrovic • 0
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topGO error : could not find function "annotationFun"
topgo R written 14 months ago by User • 0
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AffyLib query in topGO
affy topgo written 14 months ago by User • 0 • updated 14 months ago by James W. MacDonald ♦ 49k
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Unannotated genes in TopGO
topgo go analysis written 14 months ago by Yvan Wenger • 50
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TopGO - Incorrect mapping genes to GO terms
go topgo org.mm.eg.db written 14 months ago by lehallib • 0 • updated 14 months ago by James W. MacDonald ♦ 49k
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Error topGO printGenes
topgo written 14 months ago by irving.jgalo23 • 0
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using other ontologies in topGO && building GO.db like database for GO-like ontologies
go topgo written 5.1 years ago by Xin.H • 10 • updated 16 months ago by Yvan Wenger • 50
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topGO and font size in the graph plots
topgo written 10.6 years ago by Shankavaram, Uma NIH/NCI [E] • 10 • updated 16 months ago by shaungarnett • 10
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ENSEMBL causing issues replicating previous results
topgo R ensembl written 16 months ago by snguyen268 • 0
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topGO - Extra terms appearing in main analysis and the enrichment test
go topgo gene ontology written 17 months ago by beachboarder900 • 40
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