5
votes
2
answers
137
views
2
answers
extracting Allele Read Counts
rsamtools vcf written 3 months ago by Bogdan470
2
votes
2
answers
143
views
2
answers
Select specific variants from vcf file
vcf written 3 months ago by Adam0 • updated 3 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
141
views
0
answers
Error in matrix
vcf bioconductor written 3 months ago by bkauf0
2
votes
0
answers
217
views
0
answers
1
vote
0
answers
222
views
0
answers
4
votes
3
answers
321
views
3
answers
about collapsed and expanded vcf file
vcf written 6 months ago by Bogdan470 • updated 5 months ago by raggieapauly0
2
votes
2
answers
219
views
2
answers
3
votes
1
answer
219
views
1
answer
about the use of subsetByFilter()
vcf written 6 months ago by Bogdan470 • updated 6 months ago by Martin Morgan ♦♦ 20k
1
vote
3
answers
207
views
3
answers
about filtering variants from a VCF file
vcf written 6 months ago by Bogdan470
3
votes
1
answer
174
views
1
answer
0
votes
1
answer
196
views
1
answer
vcfR package vector length error
vcf written 8 months ago by jenniewoo20 • updated 8 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
247
views
1
answer
2
votes
2
answers
237
views
2
answers
1
vote
1
answer
217
views
1
answer
Expand annotation on a vcf file
variantannotation vcf written 12 months ago by Dee0 • updated 12 months ago by Michael Lawrence9.3k
0
votes
1
answer
254
views
1
answer
1
vote
1
answer
319
views
1
answer
Genome versions of the VcfFiles from AnnotationHub
annotation annotationhub software error vcf written 15 months ago by sskimb10 • updated 15 months ago by Valerie Obenchain ♦♦ 6.2k
0
votes
0
answers
578
views
0
answers
0
votes
1
answer
447
views
1
answer
vcf postion extract
variantannotation vcf position written 18 months ago by 1000G_Q0 • updated 18 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
701
views
0
answers
1
vote
1
answer
690
views
1
answer
Plot data from VCF using Gviz?
variantannotation gviz vcf written 20 months ago by Johannes Rainer860 • updated 20 months ago by Valerie Obenchain ♦♦ 6.2k
2
votes
1
answer
288
views
1
answer
genotypeToSnpMatrix doesn't handle PL
variantannotation vcf written 21 months ago by TimothéeFlutre70 • updated 20 months ago by Stephanie M. Gogarten530
3
votes
2
answers
352
views
2
answers
2
votes
1
answer
378
views
1
answer
a filter works alone but not with other filters
variantannotation vcf filtervcf written 21 months ago by TimothéeFlutre70 • updated 21 months ago by Martin Morgan ♦♦ 20k
5
votes
1
answer
266
views
1
answer
filter "isSnp" for VCF
variantannotation vcf filtervcf written 21 months ago by TimothéeFlutre70 • updated 21 months ago by Michael Lawrence9.3k
0
votes
1
answer
431
views
1
answer
filterVcf: error with param argument
variantannotation vcf filtervcf scanvcfparam writevcf written 23 months ago by pau.puigdevall0 • updated 23 months ago by Martin Morgan ♦♦ 20k
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