2
votes
1
answer
553
views
1
answer
5
votes
2
answers
194
views
2
answers
extracting Allele Read Counts
rsamtools vcf written 7 months ago by Bogdan470
2
votes
2
answers
228
views
2
answers
Select specific variants from vcf file
vcf written 7 months ago by Adam0 • updated 7 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
198
views
0
answers
Error in matrix
vcf bioconductor written 7 months ago by bkauf0
2
votes
0
answers
358
views
0
answers
1
vote
0
answers
320
views
0
answers
4
votes
3
answers
570
views
3
answers
about collapsed and expanded vcf file
vcf written 10 months ago by Bogdan470 • updated 10 months ago by raggieapauly0
2
votes
2
answers
293
views
2
answers
3
votes
1
answer
338
views
1
answer
about the use of subsetByFilter()
vcf written 10 months ago by Bogdan470 • updated 10 months ago by Martin Morgan ♦♦ 20k
1
vote
3
answers
268
views
3
answers
about filtering variants from a VCF file
vcf written 10 months ago by Bogdan470
3
votes
1
answer
237
views
1
answer
CollapsedVCF and ExpandedVCF rownames and vcfs with large ref/alt columns
variantannotation vcf written 11 months ago by Sean Davis21k • updated 11 months ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
289
views
1
answer
vcfR package vector length error
vcf written 12 months ago by jenniewoo20 • updated 12 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
310
views
1
answer
2
votes
2
answers
305
views
2
answers
1
vote
1
answer
262
views
1
answer
Expand annotation on a vcf file
variantannotation vcf written 16 months ago by Dee0 • updated 16 months ago by Michael Lawrence9.8k
0
votes
1
answer
323
views
1
answer
1
vote
1
answer
373
views
1
answer
Genome versions of the VcfFiles from AnnotationHub
annotation annotationhub software error vcf written 19 months ago by sskimb10 • updated 19 months ago by Valerie Obenchain ♦♦ 6.4k
0
votes
0
answers
695
views
0
answers
0
votes
1
answer
536
views
1
answer
vcf postion extract
variantannotation vcf position written 22 months ago by 1000G_Q0 • updated 22 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
803
views
0
answers
1
vote
1
answer
819
views
1
answer
Plot data from VCF using Gviz?
variantannotation gviz vcf written 2.0 years ago by Johannes Rainer1.1k • updated 2.0 years ago by Valerie Obenchain ♦♦ 6.4k
2
votes
1
answer
331
views
1
answer
genotypeToSnpMatrix doesn't handle PL
variantannotation vcf written 2.1 years ago by TimothéeFlutre70 • updated 2.0 years ago by Stephanie M. Gogarten530
3
votes
2
answers
400
views
2
answers
2
votes
1
answer
426
views
1
answer
a filter works alone but not with other filters
variantannotation vcf filtervcf written 2.1 years ago by TimothéeFlutre70 • updated 2.1 years ago by Martin Morgan ♦♦ 20k
5
votes
1
answer
309
views
1
answer
filter "isSnp" for VCF
variantannotation vcf filtervcf written 2.1 years ago by TimothéeFlutre70 • updated 2.1 years ago by Michael Lawrence9.8k
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