1
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3
replies
91
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Inconsistent peak areas ('into') with Matched Filter Param
xcms
3 months ago Yuki • 10 • updated 3 months ago Johannes Rainer ♦ 1.8k
1
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1
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81
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xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
3 months ago garfield320 • 30 • updated 3 months ago Johannes Rainer ♦ 1.8k
0
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1
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61
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convert from profile to centroid.
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4 months ago dneu1002 • 0 • updated 4 months ago Laurent Gatto 1.4k
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114
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Use xcms but mzR occurs error
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6 months ago 1227450726 • 0 • updated 6 months ago Kevin Blighe 2.5k
0
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4
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202
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Error with xcms - requiring MSnbase 2.15.3 but not installing
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6 months ago kramerl • 0 • updated 6 months ago Laurent Gatto 1.4k
3
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2
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How to get MS spectrum from features extracted with findChromPeaks ?
xcms
8 months ago julien.kermorvant • 20 • updated 8 months ago Johannes Rainer ♦ 1.8k
1
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2
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90
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8 months ago julien.kermorvant • 20 • updated 8 months ago ron.wehrens • 20
0
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3
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108
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10 months ago ljveillon • 0 • updated 10 months ago Johannes Rainer ♦ 1.8k
2
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13
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318
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Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
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17 months ago abrsoule • 30
0
votes
5
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188
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runInfo returns startTimeStamp -infinity
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18 months ago pol.soladelossantos • 0 • updated 18 months ago Laurent Gatto 1.4k
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6
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324
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xcms centwave roiList error
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19 months ago roxana • 10 • updated 19 months ago Johannes Rainer ♦ 1.8k
0
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1
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397
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XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
19 months ago garfield320 • 30
2
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1
reply
261
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mzR unable to open uncorrupted mzXML file
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23 months ago abrsoule • 30
0
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4
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867
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23 months ago lmg • 0
0
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0
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272
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2.0 years ago Johannes Rainer ♦ 1.8k
0
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0
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2.3 years ago Johannes Rainer ♦ 1.8k • updated 2.1 years ago Resume101 • 0
0
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4
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408
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Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
2.5 years ago cpataki • 0
0
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9
replies
820
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Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
2.5 years ago goh • 0
3
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1
reply
339
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Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
2.5 years ago goh • 0 • updated 2.5 years ago Laurent Gatto 1.4k
0
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1
reply
473
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XCMS for GC-MS
xcms GC-MS
2.6 years ago Joe • 0
0
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4
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437
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Chromatographic peak detection failed for all files
xcms
2.7 years ago yuchiu • 0
0
votes
1
reply
323
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Metabolite identification package
xcms massspectrometry metabolomics
2.9 years ago johnhamre3 • 0 • updated 2.9 years ago Johannes Rainer ♦ 1.8k
2
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4
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427
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Using massifquant for peak detection of generic matrix data?
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3.0 years ago james.dalgleish • 30
1
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2
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1.5k
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ReadMSData problem with xcms
xcms readmsdata
3.3 years ago bhgyu • 30 • updated 3.3 years ago Johannes Rainer ♦ 1.8k
1
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5
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1.4k
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'names' attribute [12] must be the same length as the vector [6]
R xcms vector
3.4 years ago bhgyu • 30
5
votes
7
replies
790
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XCMS obiwarp adjustRtime issue
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3.4 years ago bhgyu • 30 • updated 3.4 years ago Johannes Rainer ♦ 1.8k
2
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1
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1.4k
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Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
5.1 years ago dannel025 • 20 • updated 3.7 years ago wssdandan2009 • 0
0
votes
2
replies
467
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Problem with mzR and/or Rcpp?
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3.7 years ago elabiead • 0 • updated 3.7 years ago Laurent Gatto 1.4k
0
votes
0
replies
419
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xcmsFragments extract product fragment
xcms xcms2
3.7 years ago riccardo.romoli • 0
0
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1
reply
807
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New to mass spec data analysis
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3.9 years ago Dan_reichert • 0 • updated 3.9 years ago Gordon Smyth 42k
1
vote
1
reply
573
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xcms warning message
R xcms warning message
4.2 years ago deepalikale2007 • 0 • updated 4.2 years ago Johannes Rainer ♦ 1.8k
0
votes
1
reply
644
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error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
4.2 years ago buescher • 0
1
vote
7
replies
1.1k
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Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
4.2 years ago ray.bacala • 0 • updated 4.2 years ago Johannes Rainer ♦ 1.8k
0
votes
1
reply
552
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get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
4.3 years ago juniormbarga • 0 • updated 4.3 years ago Johannes Rainer ♦ 1.8k
0
votes
1
reply
592
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findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
4.4 years ago micheleserra • 0 • updated 4.4 years ago James W. MacDonald 56k
0
votes
1
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789
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metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
4.8 years ago lucie.conchou • 0 • updated 4.8 years ago ron.wehrens • 20
0
votes
6
replies
1.2k
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Help Error could not find function xcmsSet
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4.8 years ago grateshak • 0
0
votes
4
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1.4k
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Segfault error when loading xcms and mzR packages
software error mzr xcms
5.0 years ago pmartin • 0
0
votes
0
replies
660
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fillPeaks not calculating "intb" values.
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5.0 years ago Johannes Rainer ♦ 1.8k
1
vote
3
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XCMS2 on MSMS data
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5.1 years ago Titan • 0
0
votes
3
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Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
5.1 years ago Titan • 0
0
votes
4
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1.5k
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XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
5.2 years ago Titan • 0
0
votes
4
replies
1.5k
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mzR could not be loaded on XCMS
xcms msdata mzR Rcpp metabolomics
5.2 years ago Titan • 0
0
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3
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2.3k
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how to import a CDF file in R ?
xcms metaMS MSeasy r
5.4 years ago Nemo • 80 • updated 5.4 years ago peer.karmaus • 0
0
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2
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854
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get LCMS masses with more significant figures with xcmsRaw()
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5.7 years ago phoenix • 0 • updated 5.6 years ago Johannes Rainer ♦ 1.8k
0
votes
3
replies
1.5k
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Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms metabolomics
5.8 years ago Johannes Rainer ♦ 1.8k
2
votes
9
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1.4k
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Unexpected total ion count (TIC) with xcms package
xcms metabolomics
5.9 years ago Johannes Rainer ♦ 1.8k • updated 5.9 years ago Thomas Lin Pedersen • 70
1
vote
3
replies
771
views
Unable to set colors in plotrt function in xcms package
xcms bug
5.9 years ago Johannes Rainer ♦ 1.8k
1
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4
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1.4k
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How to get from xcmsRaw to a xcmsSet
xcms metabolomics
5.9 years ago Johannes Rainer ♦ 1.8k • updated 5.9 years ago Thomas Lin Pedersen • 70
0
votes
5
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1.2k
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XCMS for LC-MS
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7.2 years ago Guest User ♦ 12k • updated 7.2 years ago Bashar Amer • 20
60 results • Page 1 of 2
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Comment: Same methylation probe ID with different locus annotations in Illumina 27k and 4 by yuabrahamliu • 0
Thank you for the reply Kevin. I further checked the sequences of the probes and found something noteworthy. For the 27k package, the seque…
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Will you give the full output that you get when installing?
Comment: problem installing ENmix package by lea • 0
I tried both (with the slashes the other way around), it did not work but I delete the package directly on my file browser and it correctly…
Comment: problem installing ENmix package by James W. MacDonald 56k
Ugh. You need to convert the back slashes in the call to `unlink` to forward slashes or R will get all huffy with you.
Comment: problem installing ENmix package by James W. MacDonald 56k
Ah, that explains it. When R installs a package, it first creates a directory in your library dir called 00LOCK and does a preliminary inst…
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SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
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