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Comment: DispEsts plot
by
Sep
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0
Thanks a lot for your reply,
Based on your suggestion, I plotted the PCA and count plots (just for six of the variables)
The two plots ar…
Answer: KEGG enrichment in R and gene IDs
by
Guido Hooiveld
★
3.6k
Please note that `ENTREZID` == `ncbi-geneID`, so it seems to me you have KEGG-compatible IDs.
Reading between the lines it **seems** tha…
Answer: How edgeR estimate the common dispersion?
by
Dan
•
0
I try to answer this question. Based on the Conditional Likelihood defined in https://rss.onlinelibrary.wiley.com/doi/epdf/10.1111/j.2517-6…
Answer: Not sure what an Asymmetric MA plot means?
by
ATpoint
★
2.4k
You asked this here already https://www.biostars.org/p/9558379/ with advise to do more prefiltering and checking normalization with control…
Comment: RUVr batch correction doubling number of DEGs
by
Zainab
•
0
Thanks Michael! This has really helped me put together my analysis!
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