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Comment: dba.count() error when re-centering peaks by njrobins • 0
Thanks a lot Rory! I wanted to follow up for a bit more information about the potential issues encountered when setting `bUseSummarizeOverl…
Comment: I cannot install "microbiome" by kikiki • 0
Thank you for reply~ ![enter image description here][1] [1]: /media/images/dab5edfa-77c6-47a1-974a-9f932a28
Comment: GSEA preranked analysis downstream of DEseq2 by hermidalc ▴ 10
Regarding GSEA preranking metric approaches, what I’ve seen, including in this thread, is that many (or most) seem to do either `logFC` or …
Comment: GSEA preranked analysis downstream of DEseq2 by Michael Love 37k
That's fine I guess. I don't know what the meaning of that term is, which is a downside in my opinion. A posterior effect size is an esti…
Answer: DESeq2 LFC changes sign after adjusting for surrogates by Michael Love 37k
Yes, controlling for covariates can change the sign of the estimated coefficient. I'd recommend to use the code in the vignette for rem…
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Answer: DEGs from lfcshrink() and results()
Comment: Detection of reference genes by Deseq2
Comment: Detection of reference genes by Deseq2
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
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