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Comment: Proteomics data with NA values by ATpoint ★ 2.8k

NAs are common in proteomics data and a common strategy is to impute them, see for example the `DEP` package here at Bioconductor which dis…

Answer: Proteomics data with NA values by Laurent Gatto 1.6k

- First, you need to assess how many missing values you have. - I would recommend not to impute your data by 0 (or any arbitrary small …

Answer: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k

Sorry, I am not able to follow your question. I don't understand the design of your experiment -- you would need to provide the targets fra…

Answer: European Bioconductor Conference 2023 planning by noteminnow • 0

Great. I will join it. [baldi's basics][1] [1]: https://baldisbasics.io

Comment: BiocGenerics binary is outdated for macOS ARM by Michael Steinbaugh ▴ 90

Awesome thanks, for reference here's the lock issue: ``` ############################################################################## ##…

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Visualization of negative log CPM values

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