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ArrayTools
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BRB ArrayTool question
Channel Count Trouble
ArrayTools
8.3 years ago
affaid_tyj
▴ 10
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error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)
Annotation
GO
ArrayTools
Annotation
GO
ArrayTools
updated 11.5 years ago by
James W. MacDonald
66k • written 11.5 years ago by
José LÓPEZ
▴ 110
0
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0
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785
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qaGeneST bug
ArrayTools
ArrayTools
14.8 years ago
Dick Beyer
★ 1.4k
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2
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865
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recipe for heatmap
affy
ArrayTools
affy
ArrayTools
updated 20.0 years ago by
Laura Hollins
▴ 30 • written 20.0 years ago by
Marc Salit
▴ 80
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Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
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