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BRB ArrayTool question
Channel Count Trouble
ArrayTools
8.2 years ago
affaid_tyj
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error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)
Annotation
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ArrayTools
Annotation
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ArrayTools
updated 11.4 years ago by
James W. MacDonald
65k • written 11.4 years ago by
José LÓPEZ
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recipe for heatmap
affy
ArrayTools
affy
ArrayTools
updated 19.9 years ago by
Laura Hollins
▴ 30 • written 19.9 years ago by
Marc Salit
▴ 80
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qaGeneST bug
ArrayTools
ArrayTools
14.7 years ago
Dick Beyer
★ 1.4k
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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