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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 14.9 years ago by ★ 3.4k • written 14.9 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
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14.9 years ago mauede@alice.it ▴ 870
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R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
14.9 years ago mauede@alice.it ▴ 870
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Bizarre artifacts in MA plots for ChIP-chip data
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updated 15.6 years ago by ★ 2.4k • written 15.6 years ago by ★ 13k
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 11.1 years ago by ★ 1.2k • written 11.1 years ago by ▴ 20
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ReadAffy problems
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updated 21.0 years ago by ★ 2.3k • written 21.0 years ago by ▴ 30
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updated 15.9 years ago by ▴ 340 • written 15.9 years ago by ★ 13k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 870
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R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
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R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
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14.8 years ago mauede@alice.it ▴ 870
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importing data problem with methyAnalysis package
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xzfile() cannot open the connection, lzma encoder error 5.
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11.1 years ago Wang Ming ▴ 20
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DEG Calling on Transcripts vs Genes
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10.5 years ago Yogesh Saletore ▴ 10
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2.3 years ago simonsF.careers • 0
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18.2 years ago Birgit Hauer ▴ 30
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Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
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18.0 years ago Birgit Hauer ▴ 30
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15.3 years ago Steve Lianoglou ★ 13k
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SAM warning
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
14.9 years ago michael watson IAH-C ★ 3.4k
21 results • Page 1 of 1
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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
You seem to have the misunderstanding that you can change the design matrix but keep all the other code unchanged. The contrasts are comput…
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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