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Biophysics
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257
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Job:
Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
12 months ago
simonsF.careers
• 0
0
votes
0
replies
937
views
DEG Calling on Transcripts vs Genes
Biophysics
limma
Biophysics
limma
9.3 years ago
Yogesh Saletore
▴ 10
0
votes
0
replies
975
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
9.9 years ago
Wang Ming
▴ 20
0
votes
1
reply
1.0k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
updated 9.9 years ago by
Guangchuang Yu
★ 1.2k • written 9.9 years ago by
Wang Ming
▴ 20
0
votes
0
replies
933
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
10.1 years ago
Pan Du
▴ 440
0
votes
0
replies
1.6k
views
R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics
Biophysics
13.6 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
641
views
R: R: how to use writeFASTA in modality "append"
Biophysics
Biophysics
13.6 years ago
mauede@alice.it
▴ 870
0
votes
6
replies
1.0k
views
R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Homo sapiens
biomaRt
PING
miRNA
Biophysics
Homo sapiens
biomaRt
PING
updated 13.6 years ago by
michael watson IAH-C
★ 3.4k • written 13.6 years ago by
mauede@alice.it
▴ 870
0
votes
4
replies
1.0k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Biostrings
biomaRt
miRNA
Biophysics
Biostrings
biomaRt
13.6 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
838
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
GO
Homo sapiens
Biostrings
biomaRt
miRNA
Biophysics
GO
Homo sapiens
13.6 years ago
michael watson IAH-C
★ 3.4k
0
votes
1
reply
942
views
R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
GO
Homo sapiens
Biostrings
biomaRt
miRNA
Biophysics
GO
Homo sapiens
updated 13.6 years ago by
Sean Davis
21k • written 13.6 years ago by
mauede@alice.it
▴ 870
0
votes
3
replies
711
views
R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics
Biophysics
13.6 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
908
views
SAM warning
Biophysics
Alignment
Annotation
Normalization
Cancer
hgu133plus2
probe
affy
vsn
MBCB
vsn
14.1 years ago
elliot harrison
▴ 230
0
votes
0
replies
516
views
Filtering before differential expression analysis of microarrays - New paper out
Biophysics
Normalization
affy
vsn
Biophysics
Normalization
affy
vsn
14.1 years ago
Steve Lianoglou
13k
0
votes
0
replies
401
views
Preprocessing affymetrix array data
Biophysics
Biophysics
14.3 years ago
Abdi Ali
▴ 20
0
votes
2
replies
640
views
Bizarre artifacts in MA plots for ChIP-chip data
Microarray
Biophysics
Microarray
Biophysics
updated 14.4 years ago by
Henrik Bengtsson
★ 2.4k • written 14.4 years ago by
Steve Lianoglou
13k
0
votes
1
reply
623
views
Help with creating a figure
Biophysics
Biophysics
updated 14.6 years ago by
Artur Veloso
▴ 340 • written 14.6 years ago by
Steve Lianoglou
13k
0
votes
0
replies
1.5k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
16.8 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.0k
views
Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
16.9 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.0k
views
Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
16.9 years ago
Birgit Hauer
▴ 30
0
votes
1
reply
868
views
ReadAffy problems
Genetics
Biophysics
affy
Genetics
Biophysics
affy
updated 19.8 years ago by
Laurent Gautier
★ 2.3k • written 19.8 years ago by
Dario Greco
▴ 30
21 results • Page
1 of 1
Recent ...
Replies
Comment: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
• 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
• 0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2
by
Basti
▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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Guido Hooiveld
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