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Biophysics
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Job:
Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
4.1 years ago
simonsF.careers
• 0
0
votes
0
replies
1.5k
views
DEG Calling on Transcripts vs Genes
Biophysics
limma
Biophysics
limma
12.3 years ago
Yogesh Saletore
▴ 10
0
votes
0
replies
1.6k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
12.9 years ago
Wang Ming
▴ 20
0
votes
1
reply
1.7k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
updated 12.9 years ago by
Guangchuang Yu
★ 1.2k • written 12.9 years ago by
Wang Ming
▴ 20
0
votes
0
replies
1.5k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
13.1 years ago
Pan Du
▴ 440
0
votes
0
replies
2.3k
views
R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics
Biophysics
16.6 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
1.2k
views
R: R: how to use writeFASTA in modality "append"
Biophysics
Biophysics
16.6 years ago
mauede@alice.it
▴ 870
0
votes
6
replies
2.2k
views
R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Homo sapiens
biomaRt
PING
miRNA
Biophysics
Homo sapiens
biomaRt
PING
updated 16.6 years ago by
michael watson IAH-C
★ 3.4k • written 16.6 years ago by
mauede@alice.it
▴ 870
0
votes
4
replies
2.0k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Biostrings
biomaRt
miRNA
Biophysics
Biostrings
biomaRt
16.6 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
1.5k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
GO
Homo sapiens
Biostrings
biomaRt
miRNA
Biophysics
GO
Homo sapiens
16.6 years ago
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.6k
views
R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
GO
Homo sapiens
Biostrings
biomaRt
miRNA
Biophysics
GO
Homo sapiens
updated 16.6 years ago by
Sean Davis
21k • written 16.6 years ago by
mauede@alice.it
▴ 870
0
votes
3
replies
1.4k
views
R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics
Biophysics
16.7 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
1.5k
views
SAM warning
Biophysics
Alignment
Annotation
Normalization
Cancer
hgu133plus2
probe
affy
vsn
MBCB
vsn
17.1 years ago
elliot harrison
▴ 230
0
votes
0
replies
1.0k
views
Filtering before differential expression analysis of microarrays - New paper out
Biophysics
Normalization
affy
vsn
Biophysics
Normalization
affy
vsn
17.1 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
913
views
Preprocessing affymetrix array data
Biophysics
Biophysics
17.4 years ago
Abdi Ali
▴ 20
0
votes
2
replies
1.4k
views
Bizarre artifacts in MA plots for ChIP-chip data
Microarray
Biophysics
Microarray
Biophysics
updated 17.4 years ago by
Henrik Bengtsson
★ 2.4k • written 17.4 years ago by
Steve Lianoglou
★ 13k
0
votes
1
reply
1.2k
views
Help with creating a figure
Biophysics
Biophysics
updated 17.7 years ago by
Artur Veloso
▴ 340 • written 17.7 years ago by
Steve Lianoglou
★ 13k
0
votes
0
replies
2.2k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
19.8 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.6k
views
Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
20.0 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.6k
views
Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
20.0 years ago
Birgit Hauer
▴ 30
0
votes
1
reply
1.6k
views
ReadAffy problems
Genetics
Biophysics
affy
Genetics
Biophysics
affy
updated 22.8 years ago by
Laurent Gautier
★ 2.3k • written 22.8 years ago by
Dario Greco
▴ 30
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Answer: Unable to create venndiagram using VennDiagram 1.5.1 package
by
kesha
• 0
<a href=https://vavadacasinox.com/>vavadacasinox.com</a>
Comment: How to convert .raw data for use in xcms
by
a2a2asawhaa
• 0
try converting your files to the older mzXML format, which remains highly stable for XCMS. While waiting for large datasets to process, you…
Comment: Which preprocessing steps are needed before running limpa?
by
miro165sabo
• 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
by
Gordon Smyth
53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa?
by
Gordon Smyth
53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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