Showing : Biophysics • reset
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Job: Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
8 days ago simonsF.careers • 0
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DEG Calling on Transcripts vs Genes
Biophysics limma Biophysics limma
8.2 years ago Yogesh Saletore ▴ 10
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
8.8 years ago Wang Ming ▴ 20
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 8.8 years ago by ★ 1.2k • written 8.8 years ago by ▴ 20
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
9.0 years ago Pan Du ▴ 440
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R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics Biophysics
12.5 years ago mauede@alice.it ▴ 870
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R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
12.5 years ago mauede@alice.it ▴ 870
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 12.6 years ago by ★ 3.4k • written 12.6 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Biostrings biomaRt miRNA Biophysics Biostrings biomaRt
12.6 years ago mauede@alice.it ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
12.6 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 870
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R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
12.6 years ago mauede@alice.it ▴ 870
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744
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SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
13.0 years ago elliot harrison ▴ 230
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Filtering before differential expression analysis of microarrays - New paper out
Biophysics Normalization affy vsn Biophysics Normalization affy vsn
13.0 years ago Steve Lianoglou 13k
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Preprocessing affymetrix array data
Biophysics Biophysics
13.3 years ago Abdi Ali ▴ 20
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2
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552
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Bizarre artifacts in MA plots for ChIP-chip data
Microarray Biophysics Microarray Biophysics
updated 13.3 years ago by ★ 2.4k • written 13.3 years ago by 13k
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525
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Help with creating a figure
Biophysics Biophysics
updated 13.6 years ago by ▴ 340 • written 13.6 years ago by 13k
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Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
15.7 years ago Birgit Hauer ▴ 30
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Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
15.9 years ago Birgit Hauer ▴ 30
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Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
15.9 years ago Birgit Hauer ▴ 30
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682
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ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 18.7 years ago by ★ 2.3k • written 18.7 years ago by ▴ 30
21 results • Page 1 of 1
Recent ...
Replies
Comment: Uniform window size for different genes by rbenel ▴ 20
I tried some workaround, displaying the same gene on both tracks and playing with the `heights` but I still can't get the gene model to be …
Comment: Limma prametrization by Giovanni • 0
Thank you!
Answer: Gviz DataTrack data transformation on the fly by Robert Ivanek ▴ 710
Hi Robert, There was before only implementation of `mean` in aggregation for `window=-1`. This is now fixed in release (1.38.2) and dev…
Comment: Uniform window size for different genes by rbenel ▴ 20
Hi James, Thanks for the response! I found the chunk you are referring to, which would allow multiple tracks to be plotted and the height…
Comment: Unable to GetGRangesFromEnsDb by Francesco Monticolo • 0
Dear James, thank you very much, I upgraded to R-4.1.2 and Bioc-3.14 and I solved the issue. Best wishes Francesco
Votes
Answer: Limma prametrization
Comment: Limma prametrization
A: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
Answer: Unable to GetGRangesFromEnsDb
Comment: deseq2 + filtering low counts with noiseq function
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