Showing : Biophysics • reset
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Job: Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
12 months ago simonsF.careers • 0
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DEG Calling on Transcripts vs Genes
Biophysics limma Biophysics limma
9.3 years ago Yogesh Saletore ▴ 10
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
9.9 years ago Wang Ming ▴ 20
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 9.9 years ago by ★ 1.2k • written 9.9 years ago by ▴ 20
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
10.1 years ago Pan Du ▴ 440
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R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics Biophysics
13.6 years ago mauede@alice.it ▴ 870
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R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
13.6 years ago mauede@alice.it ▴ 870
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 13.6 years ago by ★ 3.4k • written 13.6 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Biostrings biomaRt miRNA Biophysics Biostrings biomaRt
13.6 years ago mauede@alice.it ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
13.6 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 870
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R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
13.6 years ago mauede@alice.it ▴ 870
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SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
14.1 years ago elliot harrison ▴ 230
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Filtering before differential expression analysis of microarrays - New paper out
Biophysics Normalization affy vsn Biophysics Normalization affy vsn
14.1 years ago Steve Lianoglou 13k
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Preprocessing affymetrix array data
Biophysics Biophysics
14.3 years ago Abdi Ali ▴ 20
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Bizarre artifacts in MA plots for ChIP-chip data
Microarray Biophysics Microarray Biophysics
updated 14.4 years ago by ★ 2.4k • written 14.4 years ago by 13k
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Help with creating a figure
Biophysics Biophysics
updated 14.6 years ago by ▴ 340 • written 14.6 years ago by 13k
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Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
16.8 years ago Birgit Hauer ▴ 30
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Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
16.9 years ago Birgit Hauer ▴ 30
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Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
16.9 years ago Birgit Hauer ▴ 30
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ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 19.8 years ago by ★ 2.3k • written 19.8 years ago by ▴ 30
21 results • Page 1 of 1
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Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object by shaimaa • 0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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