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Comment: Advice for the analysis of microarray data with limma
by
Sam
•
0

@gordonsmyth Do you have any references for this method? I'd be interested in learning more about this topic. I appreciate any help you can…

Comment: SpliceWiz collateData error
by
chiara.caprioli
•
0

Hi again,
while this issue was solved following your suggestions, I am facing another problem once I get my data collated.
Specifically, …

Comment: Limma-voom with inverse probability weights
by
jay
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0

Thanks, `t(t(v$weights)*w)` makes sense! Yes exactly, I use sample weights aka importance weights; so thanks for supporting my doubts. I di…

Answer: Limma-voom with inverse probability weights
by
Gordon Smyth
47k

One point is that you are not multiplying the weights correctly. `w` is an n-vector of sample weights and `v$weights` is a G x n matrix of …

Comment: error in ChAMP loading file
by
Benth
•
0

Shouldn't this p-value, which I presume shows the significance of the fold change, be scale-independent? Additionally, shouldn't all of the…

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