Bioconductor ChipSeq

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1.2k

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ChIPpeakAnno ChIPSeq

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Jerina ▴ 10

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3.2k

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DiffBind chipseq

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by ANAMIKA • 0

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1.1k

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ChIPSeq DiffBind

updated 11 months ago by Rory Stark ★ 5.2k • written 11 months ago by lin.pei26 • 0

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1.9k

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DiffBind R chipseq

updated 5 months ago by Rory Stark ★ 5.2k • written 6.6 years ago by kyliecode • 0

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428

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chipseq DifferentialMethylation DESeq2

updated 3 months ago by Michael Love 42k • written 3 months ago by rebw25 • 0

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472

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DiffBind chipseq

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by lin.pei26 • 0

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135

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chipseq

updated 4 weeks ago by James W. MacDonald 65k • written 4 weeks ago by zhulin • 0

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DiffBind macs2 chipseq

15 days ago yvonneh • 0

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194

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ChIPSeq annotation ChIPpeakAnno

3 months ago nilanjanamani88 • 0

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190

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bSubControl ChIPSeq DiffBind

4 months ago frueher • 0

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297

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ChIPpeakAnno ChIPSeq MotifDiscovery

7 months ago franciscrick41 • 0

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348

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csaw ChIPseq DiffBind

6 months ago jared.andrews07 ▴ 30

12 results • Page 1 of 1

Recent ...

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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