Bioconductor ChipSeq

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DiffBind macs2 chipseq

15 days ago yvonneh • 0

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135

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chipseq

updated 4 weeks ago by James W. MacDonald 65k • written 4 weeks ago by zhulin • 0

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193

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ChIPSeq annotation ChIPpeakAnno

3 months ago nilanjanamani88 • 0

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427

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chipseq DifferentialMethylation DESeq2

updated 3 months ago by Michael Love 42k • written 3 months ago by rebw25 • 0

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189

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bSubControl ChIPSeq DiffBind

4 months ago frueher • 0

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348

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csaw ChIPseq DiffBind

6 months ago jared.andrews07 ▴ 30

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472

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DiffBind chipseq

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by lin.pei26 • 0

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297

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ChIPpeakAnno ChIPSeq MotifDiscovery

7 months ago franciscrick41 • 0

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1.2k

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ChIPpeakAnno ChIPSeq

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Jerina ▴ 10

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3.2k

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DiffBind chipseq

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by ANAMIKA • 0

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1.1k

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ChIPSeq DiffBind

updated 11 months ago by Rory Stark ★ 5.2k • written 11 months ago by lin.pei26 • 0

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1.9k

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DiffBind R chipseq

updated 5 months ago by Rory Stark ★ 5.2k • written 6.6 years ago by kyliecode • 0

12 results • Page 1 of 1

Recent ...

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180