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Comment: Citation for edgeR user guide
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fajed45877
• 0
Collection of [word games][1]. You can comfortably study while playing on [nerdle][2]. Surely you will feel satisfied about the games it of…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you so much for your kind help. I got this error from predictVariantEffects function for my own data: what does this error mean, and …
Answer: Erroe when using makeOrgPackageFromNCBI()
by
Guido Hooiveld
★ 3.9k
Yes, that error indeed indicates that the required package `biomaRt` is not installed. I also noticed that you did not correctly follow th…
Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 210
`sgvc` is a SummarizedExperiment object and `mcols(sgvc)` is a DataFrame. The error happens because some of the columns are lists e.g. TxNa…
Comment: Assymetric MA plot with no overall trend
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Kasper
• 0
Batch effects were actually removed from the data beforehand, which is confirmed by a PCA plot. Carriers and non-carriers were not treated …
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Elastic Net for RNAseq data
Answer: SGSeq: moving toward diffex from SGSeq analysis
Answer: Can log2cpm be used for proteomics data normalization?
Ensembl 112 has been released.
A: Diffbind results - non uniform width
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