Bioconductor DEX

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DEXSeq dex

19 months ago • updated 18 months ago barrypraveen • 0

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DEX error simpleLoess RNAseq

updated 9.7 years ago by Alejandro Reyes ★ 1.9k • written 9.7 years ago by cfreije ▴ 10

2 results • Page 1 of 1

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Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…

Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

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