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Comment: How do I fix an odd voom plot in a combined dataset?
by
1sunmic2
•
0
So I changed it to ~0 + group (with the same plot), but I still don't know if it's good or what to fix if not.
Answer: Newbie Question - adding metadata to an analysis
by
James W. MacDonald
67k
See [Section 4][1]. But do note that you do not need for the `phenoData` slot to contain the data. You can simply have a 'targets' data.fra…
Comment: Want numbers in DESeq to be seen as numerical, not categorical
by
swbarnes2
★
1.4k
How did you import the data? Did you accidently leave in `stringAsFactors=True`?
But I'm not entirely sure that you don't want that to be…
Comment: MissMethyl failed to use gometh function for EPICv2
by
James W. MacDonald
67k
By version 1.38.0, I mean version 1.38.0 of `MissMethyl`.
Answer: MissMethyl failed to use gometh function for EPICv2
by
James W. MacDonald
67k
You need to [upgrade to the release version of Bioconductor][1]. You have version 1.38.0 installed which indicates that you are using the p…
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