Bioconductor Exploratory Data Analysis

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edgeR Exploratory Data Analysis

updated 8.9 years ago by Gordon Smyth 53k • written 8.9 years ago by Dario Strbenac ★ 1.6k

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Comment: Chip Seq Analysis of RNA Polymerase 2 by Tikaaaq2c • 0

Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…

Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by Tikaaaq2c • 0

Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

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Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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