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James W. MacDonald
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
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40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
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0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
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Michael Love
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For help with interpretation and design of analysis, I recommend working with a local statistician.
Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
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10
Hi Michael,
Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
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Michael Love
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Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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