updated 12 days ago by
H. Z. Amini
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written 3.0 years ago by
modarzi
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Answer: Seurat: normalized data in the integrated assay
by
Peter Hickey
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460
Seurat is not a Bioconductor package. I suggest asking on their own discussion forum https://github.com/satijalab/seurat/discussions
Comment: matrix with Salmon gene-level quantifications in DESeq
by
Michael Love
33k
I feel like this is definitely covered in the vignette. We show importing multiple samples to gene level.
Comment: matrix with Salmon gene-level quantifications in DESeq
by
luca.s
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10
Thanks James for the quick answer,
but does the tximport package work also for importing a single matrix in which are contained all gene qu…
Comment: ORF finding in DECIPHER
by
Erik Wright
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150
Thanks for reporting this issue.
1. Which version of DECIPHER are you using? 2.18 has known bugs but 2.20 should be fine.
2. Are your se…
Comment: DESeq2: Variable Importance
by
Michael Love
33k
What you do with the deviance is up to you, I was just pointing out that it is an outputted quantity.
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