Bioconductor HarvardX Introduction to Bioconductor

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BSgenome.Hsapiens.UCSC.hg19 HarvardX Introduction to Bioconductor

updated 3.6 years ago by James W. MacDonald 68k • written 5.4 years ago by m.steinruecke ▴ 10

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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Comment: limpa analysis advice by Gordon Smyth 53k

I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…

Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k

As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…

Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k

Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…

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Comment: limpa analysis advice

Answer: Limpa Pipeline Order

Answer: Array weights in dpcDE

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