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Illuminabeadchip
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Create Illmina bead summary data
beadarray
Illuminabeadchip
GenomeStudio
lumi
3 months ago
Liu
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Comment: Group-specific condition effects with individuals nested: matrix is not full ra
by
picasa1983
• 0
Sorry I made a typo in my table (now edited). The donor 4 actually has the 2 conditions: KO and WT. I think I found the issue: my design m…
Answer: SingleCellExperiment convenience function for metadata+expression?
by
Stefano Mangiola
▴ 30
This question was mentioned in the `#tidiness_in_bioc` Bioconductor slack channel. I try to give a `tidyomic` solution ``` library(tidySin…
Answer: help documentation for keytypes in annotationdbi packages
by
Eric
▴ 10
Hello, this post is quite old, but I was running into the same issue as I was unclear on what each keytype looks like. Thank you @kayla.int…
Comment: Group-specific condition effects with individuals nested: matrix is not full ra
by
ATpoint
★ 4.7k
The problem is that donor 4 is nested with condition since it is KO for both the donor 4 samples. Removing that and then making a new donor…
Comment: Group-specific condition effects with individuals nested: matrix is not full ra
by
James W. MacDonald
68k
What happens if you remove the columns of all zeros?
Votes
Answer: SingleCellExperiment convenience function for metadata+expression?
Answer: help documentation for keytypes in annotationdbi packages
Interpreting DESEQ2 interaction term and inclusion of covariate
A: Seurat/DESeq2 - single cell RNA-seq differential expression
Answer: Plot title for PCA in DESeq2
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