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Answer: Cannot Install WGCNA
by
shepherl
3.1k
If you first install preprocessCore and then try again? `BiocManager::install("preprocessCore")` `BiocManager::install("WGCNA")` …
Answer: Why Negative value from GSVA
by
Robert Castelo
★ 2.9k
hi, i guess when you say that you are using "RNA-Seq Row Count data" you mean "RNA-Seq raw count data" in the sense that the count data is …
Comment: Low Differentially Bound Sites found with DiffBind
by
gannoncottone
• 0
I will look into plots of the data more thoroughly and see if any of the trends fit the reasons for low differential binding sites! Thank y…
Answer: Low Differentially Bound Sites found with DiffBind
by
Rory Stark
★ 4.4k
The script looks fine for a basic analysis. There are a number of *possible* reasons you may not be getting any significantly differenti…
Answer: Diffbind analysis of ATAC-seq data
by
Rory Stark
★ 4.4k
This is showing that all of the open chromatin changes are in the same "direction": sites that are open in the `aa` condition only. There a…
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Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
Answer: Error message: Could not find function "DESeqDataSetFromMatrix"
XVector installation fails because zlib.h is not found
A: what is fitProbeLevelModel()? doing
Answer: How fix lines of dendrogram that overlap in the column portion of a heatmap?
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