updated 10 weeks ago by
James W. MacDonald
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written 11 weeks ago by
Colin
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Comment: Visualization of negative log CPM values
by
Sabiha
▴
10
@atpoint OK, are you referring to the `log2(cpm+1)` or `log2(tpm+1)`
Comment: Visualization of negative log CPM values
by
Sabiha
▴
10
@gordonsmyth noted. Related to the graphs above, the table below is the output from `limma`, and compound B has 2 statistically significant…
Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
> negative scale might perhaps indicate gene is too low to be really expressed.
Yes, negative logCPMs do mean that the gene is expressed a…
Comment: Visualization of negative log CPM values
by
ATpoint
★
2.8k
You can visualize whatever is appropriate for your story. If negative logCPMs are a problem (unintuitive I agree) then for visualization si…
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