Bioconductor RIp-seq

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RipSeeker RIp-seq

updated 2.4 years ago by James W. MacDonald 66k • written 2.4 years ago by GiV17 • 0

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DESeq2 RIP-seq

updated 6 weeks ago by Michael Love 42k • written 6 weeks ago by Adelaide • 0

2 results • Page 1 of 1

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Answer: Counter-directional LFC shrinkage by Michael Love 42k

It's not just the average count but also the dispersion that affects apeglm. You can try ashr for another type of shrinkage.

Comment: Error in gseDO function by Javier • 0

Thank you for your answer! The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…

Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by Ali Osman • 0

Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…

Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU by Marek Gierlinski ▴ 30

Two years on and the issue is still there. Thank you Arthur for the solution!

Comment: Cannot install oligo on Fedora by mbassal • 0

so whats the solution for this error?

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Answer: Error in gseDO function

DiffBind Batch Effect

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