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Rbiopaxparser
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bug in nem's transitive.reduction? (and thus rBiopaxParser)
nem
graphs
rbiopaxparser
7.3 years ago
Ramon Diaz-Uriarte
▴ 70
0
votes
1
reply
1.1k
views
Rbiopaxparser: how to extract a subnetwork from a pathway
Rbiopaxparser
updated 9.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.6 years ago by
Guido Leoni
▴ 200
0
votes
2
replies
1.2k
views
rBiopaxParser error
rBiopaxParser
rBiopaxParser
updated 10.9 years ago by
Dan Tenenbaum
★ 8.2k • written 10.9 years ago by
suzy.stiegelmeyer@syngenta.com
▴ 40
0
votes
4
replies
1.3k
views
rBiopaxParser, Reactome and namespaces
rBiopaxParser
rBiopaxParser
updated 11.0 years ago by
Frank Kramer
▴ 60 • written 11.0 years ago by
Paul Shannon
▴ 470
0
votes
0
replies
1.1k
views
BioPAX parsing
Pathways
Network
Rgraphviz
rBiopaxParser
Pathways
Network
Rgraphviz
rBiopaxParser
11.6 years ago
Frank Kramer
▴ 10
5 results • Page
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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