Bioconductor Rnaseq

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sgseq rnaseq

updated 3 days ago by Sara • 0 • written 6.7 years ago by Sylvain Foisy ▴ 80

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limma edgeR RNASeq

updated just now by Gordon Smyth 50k • written 21 days ago by Shaimaa Gamal • 0

2 results • Page 1 of 1

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Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.

Comment: deseq2 results by swbarnes2 ★ 1.4k

It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…

Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go!

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k

Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…

Comment: Log-cpm values from limma by Gordon Smyth 50k

No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …

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Comment: deseq2 results

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