Showing : VIPER • reset
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question on the p value for VIPER results by dorothea
RNAseq VIPER Doth
2.6 years ago snowmattin • 0
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Using VIPER to compare protein activity in normal vs diseased samples
viper
3.3 years ago tjbencomo • 0
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Trying to download VIPER
software error viper
updated 5.5 years ago by ★ 13k • written 5.5 years ago by • 0
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Data input for aracne2regulon function in viper package
viper
updated 15 months ago by • 0 • written 5.7 years ago by ▴ 30
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VIPER (Protein Activity Inference) gene expression signature format
VIPER aracne.networks
8.2 years ago user31888 ▴ 30
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Use of Viper with a regulatory network built with my dataset or another one?
viper aracne regulatory network aracne.networks
8.5 years ago ldetorrente ▴ 10
6 results • Page 1 of 1
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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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