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Answer: *** caught segfault *** , cause 'memory not mapped'
by
James W. MacDonald
62k
You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…
Comment: Help with Error in DiffBind
by
Chris
•
0
Thanks Rory!
result <- dba(samples)
Error in if ((length(callers) == 1) & (callers[1] == "counts")) { :
argument is of len…
Answer: Help with Error in DiffBind
by
Rory Stark
★
4.7k
In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…
Comment: Help with Error in DiffBind
by
Rory Stark
★
4.7k
Looks like you should either delete the file
> /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai
…
Comment: How to getting synonymous SNPs from BiomaRt before timing out?
by
James W. MacDonald
62k
```
> options(timeout = 1e6)
> z <- getBM(snp_attributes, c("ensembl_gene","so_mini_parent_name"), list("ENSG00000138376", "synonymous_vari…
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