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Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
by
Gordon Smyth
51k
Thanks very much for the reproducible example. The bug has been fixed now in edgeR 4.3.17 on the Bioconductor developmental repository.
Answer: Highly DE genes but small count difference within conditions
by
h1vu81gcd7
• 0
It sounds like you're diving deep into DE analysis, comparing condition1 with the control using a solid design. However, the elevated padj …
Comment: dmpFinder for other objects
by
neyousha
• 0
Hi James, Thank you a lot for responding. Hmm... so do you think if have matrix average_beta below: ![average_beta_matrix][1] [1]:…
Comment: DEseq2 time-series design
by
Michael Love
42k
Would you mind making a new post -- it's just easier for threaded content. And feel free to post any particular code or images you need.
Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes
by
Yang Liao
▴ 440
Thanks for taking the time to report the bug! The provided `Valgrind` report is very helpful and suggests the issue lies within the banded …
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Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
Answer: dmpFinder for other objects
GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
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