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Problem installing packages on new R
limma beadarray lumi arrayMvout limma beadarray lumi arrayMvout
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 10
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Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by Raya • 0
Thank you so much! Here are the steps we took, as well as the resulting coldata for the ads object, as well as the sce object we converted …
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations by Aurélie • 0
Thank you so much!
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations by Aurélie • 0
Yes, I know. This was just to get a simple example ;-).
Comment: Getting way too many DEGs with LRT for time-series RNA-seq! by James W. MacDonald 68k
I don't use `DESeq2` for RNA-Seq analyses, but it's my understanding that `lfcShrink` is meant only for plotting and other visualizations r…
Comment: Are voomByGroup and voomLmFit compatible? by richardallenfriedmanbrooklyn ▴ 30
Gordon, Thank you for the clarification. Best wishes, Rich
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Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Answer: Are voomByGroup and voomLmFit compatible?
Answer: p-adjusted values in multiple comparisons
Comment: p-adjusted values in multiple comparisons
Answer: p-adjusted values in multiple comparisons
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