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Comment: Advice for the analysis of microarray data with limma by Sam • 0
I rather meant the basis behind your proposed approach. How do I know that I can model temporal effects without replicates by fitting ortho…
Comment: Not able to download recount3 data by Niveditha ▴ 10
Thank you for the update, Leo. I'll check on this and get back to you in case the issue still persists.
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 16k
See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 16k
See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932
Comment: Sva and batch effect by Gordon Smyth 47k
(+1). I find that ComBat tends to introduce spurious differential expression so, you think there's a batch effect affecting the variances a…
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Comment: Sva and batch effect
closest-features equivalent in Bioconductor for finding closest gene(s)
Answer: Sva and batch effect
Answer: AnnotationForge::makeOrgPackage "argument is missing, with no default" Errors
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
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