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Comment: heatmap with batch effect by tothuhien • 0

Hi, thank you very much for your reply. Yes what you said is true. Sorry I forgot to say that this is a just subset of samples. There are m…

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

Hello Michael, thanks for your answer. Yes, I have only 3 samples :(. Dropping sex would remove those genes but at the same time does not i…

Answer: Highly DE genes but small count difference within conditions by Michael Love 42k

Could be due to controlling for sex. You have only three samples? Dropping sex would likely remove such genes as marginally you don't se…

Comment: How to control batch effect if Group and batch are same? by earntodiessaz • 0

These are the types of games that can be found at **[lol beans][1]**. To the fullest extent possible, do it. Before engaging in activities …

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GSVA ssGSEA vs. Broad implementation of ssGSEA

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