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Answer: How to read OSCA book? by Lluís Revilla Sancho ▴ 730
The OSCA book is hosted by Bioconductor here: [https://bioconductor.org/books/release/OSCA/][1]. You can just use the browser and consult…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Guido Hooiveld ★ 4.1k
By using a slightly different way I get much larger numbers; both for the total number of input that could be annotated (= mapped to IDs), …
Comment: mutational signatures problems by Danyiel • 0
ty for solustion
Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value by Michael Love 42k
This is covered in the workflow (rnaseqGene). You can filter them, but no they will not negatively affect the multiple testing because o…
Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10
Thank you, the strange thing is that I am only getting positive effect sizes. I [see two relevant definitions][1]: - Eff_* : The effect s…
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Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus
Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus
Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th
Answer: object 'hdac_targets' not found
Answer: object 'hdac_targets' not found
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