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cross correlation
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ChIPQC produces empty cross correlation plot
chipqc
cross correlation
4.8 years ago
nikhil.ashok.joshi
• 0
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Comment: Robust way of dealing with low number of samples for Differential Gene Expressio
by
ATpoint
★ 4.5k
Only thing I would add here is that in my hands limma-trend is preferable for single-cell data (https://support.bioconductor.org/p/9159638/…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio
by
Satoshi
• 0
Alright, thanks that answers my question
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
by
Michael Love
42k
I find pseudo-bulking is a robust way to approach DE, provided reliable cell type identification across samples, and when used with appropr…
Comment: DESeq2 with unbalanced experimental design
by
Satoshi
• 0
I created one here: https://support.bioconductor.org/p/9160361/. Thanks!
Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
by
altintas.ali
• 0
This is such an elegant showcase of two-color microarray data analysis. Thank you so much for your great help and valuable feedback.
Votes
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
Answer: Identifying DEGs using lfcshrink()
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