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crossover study
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Limma design matrix for three-treatment crossover study
limma design matrix
limma
limma contrast matrix
crossover study
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
smhughes
▴ 10
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
When using `arrayWeights()`, you mean the variability within the same group, is that correct? I alway run `arrayWeights()` because I naive …
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Sey R.
• 0
Thank you for your response
Comment: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Hi Alessia. Makes sense. Something I use often are the support levels from ENSEMBL and the annotation of principal isoforms. These substant…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…
Answer: Fold change calculation in Diffbind vs. DESEQ2?
by
Michael Love
41k
There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.
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Comment: Why p value inconsistent when using different number of pathway score?
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Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
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