Showing : limma contrast matrix • reset
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Creating a correct limma model with respect to contrast matrix and design matrix
limma limma contrast matrix limma design matrix
updated 6.3 years ago by ★ 28k • written 6.3 years ago by • 0
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Methylation EPIC annotation - the logFC values represented as boxplots
probe to gene id logFC illuminahumanmethylationepicanno.ilm10b2.hg19 limma contrast matrix
updated 6.7 years ago by 67k • written 6.7 years ago by • 0
4
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4
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edgeR design matrix and contrasts: how to make contrast between groups that aren't shown in the design matrix columns?
edger design and contrast matrix contrast limma contrast matrix limma
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 20
5
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Correct contrast for testing multi-level interaction effect in limma using combined factors design matrix
limma contrast matrix limma design matrix limma rna-seq limma voom
updated 7.7 years ago by ★ 28k • written 7.7 years ago by • 0
2
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8
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5.7k
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limma interaction contrasts
limma contrast matrix limma design matrix limma
updated 7.7 years ago by ★ 28k • written 7.7 years ago by ▴ 20
2
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15
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3.4k
views
limma: how to use pairing and adjust for covariates
limma limma-voom limma paired analysis limma contrast matrix
updated 7.7 years ago by ★ 28k • written 7.7 years ago by ▴ 10
1
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6
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3.8k
views
Multiple testing limma contrasts
limma limma voom limma contrast matrix multiple testing correction
updated 7.8 years ago by 67k • written 7.8 years ago by ▴ 10
3
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5
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2.3k
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Limma-voom contrast confusion
limma limma voom limma design matrix limma contrast matrix limma paired analysis
updated 7.8 years ago by ★ 28k • written 7.8 years ago by ▴ 10
1
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5
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Limma: paired multifactor analysis
limma limma design matrix limma contrast matrix limma paired analysis limma-voom
updated 7.8 years ago by 52k • written 7.8 years ago by ▴ 10
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2
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1.0k
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Help with limma contrast/design matrices
limma contrast matrix
8.1 years ago mat149 ▴ 80
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4
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1.6k
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contrast matrix design for a comparison (trend) of drug concentrations
limma contrast matrix affymetrix microarrays limma
updated 8.1 years ago by ★ 28k • written 8.1 years ago by ▴ 840
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2
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Limma design matrix for three-treatment crossover study
limma design matrix limma limma contrast matrix crossover study
updated 8.1 years ago by ★ 28k • written 8.1 years ago by ▴ 10
7
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Limma contrast for variables disease, gender and age
limma design matrix limma limma contrast matrix microarrays
8.4 years ago miyuki_iii ▴ 10
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3.6k
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limma: model/contrast matrix for 2x3 factorial design
limma multifactorial design design and contrast matrix limma design matrix limma contrast matrix
updated 8.7 years ago by 52k • written 8.7 years ago by • 0
1
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5
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1.4k
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Question about contrast matrix using limma
limma rna-seq limma contrast matrix
updated 8.7 years ago by 52k • written 8.7 years ago by • 0
2
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4
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9.3k
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Limma design and contrast matrix
limma limma design matrix limma contrast matrix
8.7 years ago donny.dw • 0
16 results • Page 1 of 1
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Comment: Running multiple KNN queries in parallel by SamGG ▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
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