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updated 11 months ago by
fabian.roger08
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updated 12 months ago by
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Comment: CPM after RUVseq
by
James W. MacDonald
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Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq
by
Jess
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0
Thank you James!
It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
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- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
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This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
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