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dada2
•
reset
0
votes
4
replies
567
views
Trouble Installing DADA2 (warning: R new user)
dada2
updated 3 months ago by
shepherl
4.0k • written 3 months ago by
schott01
• 0
0
votes
2
replies
619
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
3 months ago • updated 5 weeks ago
abhisek001
• 0
0
votes
1
reply
326
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
4 months ago • updated 3 months ago
abhisek001
• 0
0
votes
0
replies
493
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
11 months ago
Sara
• 0
0
votes
0
replies
556
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
11 months ago
Sara
• 0
2
votes
2
replies
633
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
13 months ago
GlycineMax
• 0
0
votes
14
replies
2.5k
views
Trouble downloading dada2
dada
dada2
20 months ago
elliottchon97
• 0
0
votes
3
replies
1.3k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 22 months ago by
Erik Wright
▴ 150 • written 22 months ago by
Nelli
• 0
0
votes
2
replies
1.0k
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
2.1 years ago
anasjamshed1994
• 0
1
vote
3
replies
1.3k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 2.5 years ago by
shepherl
4.0k • written 2.5 years ago by
safiq713
• 0
27
votes
13
replies
17k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 20 months ago by
Yoon Young
• 0 • written 3.4 years ago by
lh290
▴ 60
0
votes
4
replies
2.0k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.7 years ago
ymtan
• 0
0
votes
0
replies
932
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
3.1 years ago
Manijeh
• 0
0
votes
0
replies
1.2k
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
3.2 years ago
Yoan
• 0
0
votes
5
replies
2.5k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 3.4 years ago by
fabian.roger08
▴ 10 • written 4.7 years ago by
fabian.roger
• 0
0
votes
1
reply
895
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 3.4 years ago by
Michael Love
42k • written 3.4 years ago by
GlycineMax
• 0
4
votes
8
replies
4.4k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 3.4 years ago by
Axel Klenk
★ 1.0k • written 3.4 years ago by
mschmidt
▴ 10
0
votes
0
replies
1.1k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.5 years ago
anrongloh
• 0
1
vote
1
reply
4.2k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.5 years ago by
James W. MacDonald
67k • written 3.5 years ago by
Daniel
• 0
0
votes
0
replies
1.2k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.5 years ago
beginner87
• 0
0
votes
1
reply
2.1k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.8 years ago by
James W. MacDonald
67k • written 5.8 years ago by
mafusa20
• 0
0
votes
1
reply
1.1k
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 6.2 years ago by
James W. MacDonald
67k • written 6.2 years ago by
gradypierroz
• 0
4
votes
4
replies
2.7k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.6 years ago by
benjamin.j.callahan
▴ 50 • written 6.6 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
1.9k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 7.1 years ago by
daniel.vantwisk
▴ 50 • written 7.1 years ago by
rggriggs
• 0
1
vote
7
replies
18k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 7.3 years ago by
jiangjing_ing
• 0 • written 7.4 years ago by
navlern
• 0
25 results • Page
1 of 1
Recent ...
Replies
Comment: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
by
gabry.scata
▴ 10
Hi James, and thank you so much for your quick reply! That's great to know that I have installed successfully the packages i wanted. What …
Comment: pathview error "negative length vectors are not allowed
by
Evan
• 0
Same for N-glycan metabolism-- fails with `same.layer = TRUE` , smudges and comet-like shading with `same.layer = FALSE`, crowded web with …
Comment: How to conduct maSigPro analysis with only one condition?
by
James W. MacDonald
67k
Technically it's fitting an analysis of deviance (ANODEV) test, but the principle is the same - deviance, like the likelihood, measures goo…
Comment: How to conduct maSigPro analysis with only one condition?
by
James W. MacDonald
67k
Yeah, it's fine. What `maSigPro` does in this case is to reformulate the data. Your design has columns that are not useful, and `maSigPro` …
Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
by
James W. MacDonald
67k
You have installed the packages you wanted: ``` package BiocVersion successfully unpacked and MD5 sums checked package LEA success…
Votes
Comment: How to conduct maSigPro analysis with only one condition?
Comment: How to conduct maSigPro analysis with only one condition?
Comment: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat
Answer: How to conduct maSigPro analysis with only one condition?
Answer: How to conduct maSigPro analysis with only one condition?
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