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dada2
•
reset
0
votes
4
replies
288
views
Trouble Installing DADA2 (warning: R new user)
dada2
updated 23 days ago by
shepherl
3.9k • written 24 days ago by
schott01
• 0
0
votes
1
reply
165
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
updated 15 days ago by
nec14cet0pmat
• 0 • written 28 days ago by
abhisek001
• 0
0
votes
1
reply
188
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
9 weeks ago • updated 25 days ago
abhisek001
• 0
0
votes
0
replies
401
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
9 months ago
Sara
• 0
0
votes
0
replies
468
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
9 months ago
Sara
• 0
2
votes
2
replies
544
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
11 months ago
GlycineMax
• 0
0
votes
14
replies
2.3k
views
Trouble downloading dada2
dada
dada2
17 months ago
elliottchon97
• 0
0
votes
3
replies
1.2k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 19 months ago by
Erik Wright
▴ 150 • written 19 months ago by
Nelli
• 0
0
votes
2
replies
929
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
23 months ago
anasjamshed1994
• 0
1
vote
3
replies
1.3k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 2.3 years ago by
shepherl
3.9k • written 2.3 years ago by
safiq713
• 0
27
votes
13
replies
17k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 17 months ago by
Yoon Young
• 0 • written 3.2 years ago by
lh290
▴ 60
0
votes
4
replies
1.9k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.5 years ago
ymtan
• 0
0
votes
0
replies
850
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
2.9 years ago
Manijeh
• 0
0
votes
0
replies
1.1k
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
3.0 years ago
Yoan
• 0
0
votes
5
replies
2.4k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 3.2 years ago by
fabian.roger08
▴ 10 • written 4.5 years ago by
fabian.roger
• 0
0
votes
1
reply
845
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
GlycineMax
• 0
4
votes
8
replies
4.2k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 3.2 years ago by
Axel Klenk
★ 1.0k • written 3.2 years ago by
mschmidt
▴ 10
0
votes
0
replies
1.0k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.3 years ago
anrongloh
• 0
1
vote
1
reply
3.9k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.3 years ago by
James W. MacDonald
66k • written 3.3 years ago by
Daniel
• 0
0
votes
0
replies
1.1k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.3 years ago
beginner87
• 0
0
votes
1
reply
2.0k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.6 years ago by
James W. MacDonald
66k • written 5.6 years ago by
mafusa20
• 0
0
votes
1
reply
1.1k
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 6.0 years ago by
James W. MacDonald
66k • written 6.0 years ago by
gradypierroz
• 0
4
votes
4
replies
2.6k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.4 years ago by
benjamin.j.callahan
▴ 50 • written 6.4 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
1.8k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 6.9 years ago by
daniel.vantwisk
▴ 50 • written 6.9 years ago by
rggriggs
• 0
1
vote
7
replies
18k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 7.1 years ago by
jiangjing_ing
• 0 • written 7.2 years ago by
navlern
• 0
25 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
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Michael Love
42k
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