Showing : dada2 • reset
4
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Is there a different way to generate a tree for phyloseq object
r dada2 Bioconductor
updated 4 days ago by ▴ 980 • written 7 days ago by ▴ 10
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DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
4 weeks ago anrongloh • 0
0
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1
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86
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Setting up bioconductor on a Linux server using conda
dada2 conda phyloseq
updated 6 weeks ago by 56k • written 6 weeks ago by • 0
0
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0
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80
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from raw reads ASV table - dada2 - small number of merged pairs
dada2 515F - 806Rd
13 months ago beginner87 • 0
0
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4
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240
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 15 months ago by ▴ 150 • written 15 months ago by • 0
0
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1
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453
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Error: record does not start with '@'
DADA2 .fq
updated 2.3 years ago by 56k • written 2.3 years ago by • 0
0
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1
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396
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Cannot Update Biostrings to Latest Version
dada2 biostrings
updated 2.8 years ago by 56k • written 2.8 years ago by • 0
3
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4
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1.1k
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Using DADA2 output for DESeq2
deseq2 dada2
updated 3.2 years ago by ▴ 40 • written 3.2 years ago by • 0
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1
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1.0k
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dada2 unavailable for R 3.4.1
bioconductor R dada2
updated 3.7 years ago by ▴ 50 • written 3.7 years ago by • 0
1
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7
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4.5k
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Dada2 and GenomeInfoDbData installation
dada2 GenomeInfoDbData
updated 3.8 years ago by • 0 • written 3.9 years ago by • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: IRanges::findOverlapPairs cannot take inputs if they are too large by Yixin • 0
Your solution is amazing! `unlist()` then `split()` really do the trick. I didn't know `split()` can relist the results perfectly via the g…
Answer: limma - removing samples? by Gordon Smyth 42k
In general, it is best to analyse each independent dataset with all the samples as it was originally analysed. There is no need to restrict…
Comment: DESeq2 Model Design by Michael Love 32k
Hi, I'm sorry but I don't have time at the moment to provide guidance on setting up the statistical analysis for user's datasets. I recomm…
Comment: Error wth Installation BiocManager by Martin Morgan 25k
And to be clear, does ``` readLines("https://bioconductor.org/config.yaml") ``` work? (or with `http://`)? If not, then it is definitely a …
Comment: DESeq2 Model Design by drives • 0
Hello, This particular thread has been incredibly useful. Thanks so much. I am slightly confused about comparing treatments. I have a data…
Votes
Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
C: Adjust for multiple batches using combat
A: Adjust for multiple batches using combat
Comment: Unable to install packages on MacOS
Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
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