Bioinformatics Answers

Showing : dada2 • reset

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DECIPHER dada2

14 days ago anrongloh • 0

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dada2 conda phyloseq

updated 24 days ago by James W. MacDonald 56k • written 24 days ago by Daniel • 0

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dada2 515F - 806Rd

13 months ago beginner87 • 0

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209

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decipher dada2

updated 14 months ago by Erik Wright ▴ 150 • written 14 months ago by fabian.roger • 0

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434

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DADA2 .fq

updated 2.3 years ago by James W. MacDonald 56k • written 2.3 years ago by mafusa20 • 0

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385

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dada2 biostrings

updated 2.7 years ago by James W. MacDonald 56k • written 2.7 years ago by gradypierroz • 0

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1.0k

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deseq2 dada2

updated 3.1 years ago by benjamin.j.callahan ▴ 40 • written 3.1 years ago by blastzone.heimerdinger • 0

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1.0k

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bioconductor R dada2

updated 3.7 years ago by daniel.vantwisk ▴ 50 • written 3.7 years ago by rggriggs • 0

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4.5k

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dada2 GenomeInfoDbData

updated 3.8 years ago by jiangjing_ing • 0 • written 3.9 years ago by navlern • 0

9 results • Page 1 of 1

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Answer: unable to forge custom BSgenome after update by Hervé Pagès 14k

Hi, You need to specify the `circ_seqs` field in your seed file. `forgeBSgenomeDataPkg()` needs to know which sequences are circular …

Comment: How to apply limma-trend or voom to batch corrected single cell data? (non-integ by hainct • 0

Thank you @alun

Comment: EnhancedVolcano plot with colCustom by Neeraja Vegesna ▴ 10

Hi Kevin, It worked once I added `names(keyvals.colour1)[keyvals.colour1 == '#8F8F8F'] <- 'NA'`. ![volcanoplot][1] Thanks a lot for you…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mwong043 • 0

Thanks Rory. I tried the first method by defining a vector containing the normalisation factors for my samples and it worked. I am just wo…

Comment: EnhancedVolcano plot with colCustom by Kevin Blighe 2.8k

Hi, that's great that it works with a lower number of groups. Can you re-check the logic flow when you are using more groups? *EnhancedVolc…

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mgcv not updating

Answer: How to apply limma-trend or voom to batch corrected single cell data? (non-integ

Comment: EnhancedVolcano plot with colCustom

Awards • All

Scholar to Hervé Pagès 14k

Scholar to Aaron Lun ★ 26k