Bioconductor Dba.peakset

Showing : dba.peakset • reset

1

vote

4

replies

904

views

diffbind chip-seq dba.peakset

updated 4.5 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by Theo ▴ 10

0

votes

1

reply

732

views

diffbind dba.count dba.peakset

updated 6.1 years ago by Rory Stark ★ 5.2k • written 6.1 years ago by pau.rodriguez.sodupe • 0

2

votes

1

reply

967

views

diffbind dba.peakset

updated 7.2 years ago by Rory Stark ★ 5.2k • written 7.2 years ago by fusion.slope ▴ 10

3 results • Page 1 of 1

Recent ...

Replies

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: CombineArrays for EPIC and EPIC V2

Awards • All