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dba.count
•
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0
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459
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DiffBind3: all samples have 0 counts for all genes. check the counting script
dba.count
DiffBind3
19 months ago
yang
• 0
1
vote
6
replies
1.1k
views
DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
DiffBind
dba.count
updated 20 months ago by
Rory Stark
★ 5.0k • written 20 months ago by
tjhwangxiong
• 0
1
vote
3
replies
961
views
issue with DiffBind dba.count
bam
bai
DiffBind
dba.count
Diffbind
updated 2.1 years ago by
Rory Stark
★ 5.0k • written 2.1 years ago by
mtsompana
▴ 10
0
votes
6
replies
2.5k
views
DiffBind: Error in heights * sapply(called, function(x) x)
diffbind
dba.count
summits
updated 2.7 years ago by
Rory Stark
★ 5.0k • written 5.8 years ago by
zhaolin20042008
• 0
0
votes
1
reply
449
views
diffbind counts as same values
diffbind
dba.count
dba.report
updated 4.0 years ago by
Rory Stark
★ 5.0k • written 4.0 years ago by
chadnewton
• 0
0
votes
4
replies
1.6k
views
How to produce the fraction of reads in peaks (FRiP) using DiffBind
DiffBind
FRiP
ATAC-Seq
dba.show
dba.count
updated 4.5 years ago by
Rory Stark
★ 5.0k • written 4.5 years ago by
Gary
▴ 20
0
votes
1
reply
1.2k
views
Handing duplicates in DiffBind
diffbind
dba.count
bRemoveDuplicates
bUseSummarizeOverlaps
updated 4.5 years ago by
Rory Stark
★ 5.0k • written 4.6 years ago by
loretta
• 0
1
vote
1
reply
1.2k
views
how to retrieve binding affinity matrix in diffbind
diffbind
dba.count
updated 4.6 years ago by
Rory Stark
★ 5.0k • written 4.6 years ago by
hamaor
• 0
0
votes
1
reply
618
views
dba.count generates less ranges than input peakset
diffbind
dba.count
dba.peakset
updated 5.5 years ago by
Rory Stark
★ 5.0k • written 5.5 years ago by
pau.rodriguez.sodupe
• 0
3
votes
7
replies
1.6k
views
dba.count with pre-defined regions
dba.count
dba
chipseq
diffbind
updated 5.8 years ago by
Rory Stark
★ 5.0k • written 5.8 years ago by
sylvia
▴ 10
0
votes
6
replies
1.7k
views
Warnings when update DiffBind and running errors
diffbind
atac-seq
dba.count
updated 5.8 years ago by
Rory Stark
★ 5.0k • written 5.8 years ago by
zhaolin20042008
• 0
3
votes
9
replies
2.1k
views
Error When using dba.count() in DiffBind
dba.count
atac-seq
diffbind
updated 5.9 years ago by
Gord Brown
▴ 650 • written 5.9 years ago by
ew152
• 0
0
votes
1
reply
817
views
Error with dba.count function code
diffbind
dba.count
atac-seq
updated 5.9 years ago by
Gord Brown
▴ 650 • written 5.9 years ago by
VCLRAC001
• 0
0
votes
3
replies
1.2k
views
Error with dba.count function
diffbind
dba.count
updated 5.9 years ago by
Gord Brown
▴ 650 • written 5.9 years ago by
VCLRAC001
• 0
1
vote
5
replies
2.1k
views
Problem reading Bed file using dba.count in DiffBind
DiffBind
dba.count
Chip-Seq
Differential analysis
updated 2.5 years ago by
Goku
• 0 • written 6.0 years ago by
urjaswita
▴ 40
0
votes
2
replies
859
views
Diffbind results - non uniform width
diffbind
dba.count
updated 6.4 years ago by
Rory Stark
★ 5.0k • written 6.4 years ago by
BioinfGuru
▴ 20
0
votes
1
reply
1.5k
views
DiffBind - Difference in counting methodology when summits option in dba.count is on?
diffbind
dba.count
summits
updated 6.7 years ago by
Rory Stark
★ 5.0k • written 6.8 years ago by
julien.bryois
• 0
1
vote
2
replies
974
views
The descriptions of score methods in DiffBind
DiffBind
dba.count
score
manual
PDF
updated 6.8 years ago by
Rory Stark
★ 5.0k • written 6.8 years ago by
Gary
▴ 20
0
votes
3
replies
1.1k
views
DiffBind dba.count() seqfault
diffbind
dba.count
7.4 years ago
em540
• 0
1
vote
3
replies
2.0k
views
[DiffBind] Memory issues with dba.count()
diffbind
bigmemory
matrix
dba.count
updated 8.1 years ago by
Rory Stark
★ 5.0k • written 8.1 years ago by
enricoferrero
▴ 660
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Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block
by
Hervé Pagès
16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error
by
Gordon Smyth
48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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