Showing : dba.count • reset
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633
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DiffBind dba.count() crash/can't finish problems
dba.count DiffBind ATACSeq
updated 14 months ago by 67k • written 14 months ago by • 0
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0
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852
views
DiffBind3: all samples have 0 counts for all genes. check the counting script
dba.count DiffBind3
2.8 years ago yang • 0
1
vote
6
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1.8k
views
DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
DiffBind dba.count
updated 2.9 years ago by ★ 5.2k • written 2.9 years ago by • 0
1
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3
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1.5k
views
issue with DiffBind dba.count
bam bai DiffBind dba.count Diffbind
updated 3.3 years ago by ★ 5.2k • written 3.3 years ago by ▴ 10
0
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6
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3.3k
views
DiffBind: Error in heights * sapply(called, function(x) x)
diffbind dba.count summits
updated 3.9 years ago by ★ 5.2k • written 7.0 years ago by • 0
0
votes
1
reply
739
views
diffbind counts as same values
diffbind dba.count dba.report
updated 5.2 years ago by ★ 5.2k • written 5.2 years ago by • 0
0
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4
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2.4k
views
How to produce the fraction of reads in peaks (FRiP) using DiffBind
DiffBind FRiP ATAC-Seq dba.show dba.count
updated 5.7 years ago by ★ 5.2k • written 5.7 years ago by ▴ 20
0
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1
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1.9k
views
Handing duplicates in DiffBind
diffbind dba.count bRemoveDuplicates bUseSummarizeOverlaps
updated 5.7 years ago by ★ 5.2k • written 5.8 years ago by • 0
1
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1
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1.6k
views
how to retrieve binding affinity matrix in diffbind
diffbind dba.count
updated 5.8 years ago by ★ 5.2k • written 5.8 years ago by • 0
0
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1
reply
831
views
dba.count generates less ranges than input peakset
diffbind dba.count dba.peakset
updated 6.7 years ago by ★ 5.2k • written 6.7 years ago by • 0
3
votes
7
replies
2.2k
views
dba.count with pre-defined regions
dba.count dba chipseq diffbind
updated 7.0 years ago by ★ 5.2k • written 7.0 years ago by ▴ 10
0
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6
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2.2k
views
Warnings when update DiffBind and running errors
diffbind atac-seq dba.count
updated 7.0 years ago by ★ 5.2k • written 7.0 years ago by • 0
3
votes
9
replies
3.1k
views
Error When using dba.count() in DiffBind
dba.count atac-seq diffbind
updated 7.1 years ago by ▴ 670 • written 7.1 years ago by • 0
0
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1
reply
1.2k
views
Error with dba.count function code
diffbind dba.count atac-seq
updated 7.1 years ago by ▴ 670 • written 7.1 years ago by • 0
0
votes
3
replies
1.7k
views
Error with dba.count function
diffbind dba.count
updated 7.1 years ago by ▴ 670 • written 7.1 years ago by • 0
1
vote
5
replies
2.8k
views
Problem reading Bed file using dba.count in DiffBind
DiffBind dba.count Chip-Seq Differential analysis
updated 3.7 years ago by • 0 • written 7.2 years ago by ▴ 40
1
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2
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1.3k
views
Diffbind results - non uniform width
diffbind dba.count
updated 7.6 years ago by ★ 5.2k • written 7.6 years ago by ▴ 70
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1
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1.8k
views
DiffBind - Difference in counting methodology when summits option in dba.count is on?
diffbind dba.count summits
updated 7.9 years ago by ★ 5.2k • written 8.0 years ago by • 0
1
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2
replies
1.3k
views
The descriptions of score methods in DiffBind
DiffBind dba.count score manual PDF
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 20
0
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3
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1.5k
views
DiffBind dba.count() seqfault
diffbind dba.count
8.6 years ago em540 • 0
1
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3
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2.7k
views
[DiffBind] Memory issues with dba.count()
diffbind bigmemory matrix dba.count
updated 9.3 years ago by ★ 5.2k • written 9.3 years ago by ▴ 660
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Comment: Running multiple KNN queries in parallel by SamGG ▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
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Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
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