Showing : dba.count • reset
0
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3
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153
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issue with DiffBind dba.count
bam bai DiffBind dba.count Diffbind
updated 28 days ago by ★ 4.1k • written 6 weeks ago by • 0
0
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6
replies
1.1k
views
DiffBind: Error in heights * sapply(called, function(x) x)
diffbind dba.count summits
updated 8 months ago by ★ 4.1k • written 3.8 years ago by • 0
0
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1
reply
190
views
diffbind counts as same values
diffbind dba.count dba.report
updated 23 months ago by ★ 4.1k • written 2.0 years ago by • 0
0
votes
4
replies
605
views
How to produce the fraction of reads in peaks (FRiP) using DiffBind
DiffBind FRiP ATAC-Seq dba.show dba.count
updated 2.5 years ago by ★ 4.1k • written 2.5 years ago by ▴ 20
0
votes
1
reply
472
views
Handing duplicates in DiffBind
diffbind dba.count bRemoveDuplicates bUseSummarizeOverlaps
updated 2.5 years ago by ★ 4.1k • written 2.5 years ago by • 0
1
vote
1
reply
592
views
how to retrieve binding affinity matrix in diffbind
diffbind dba.count
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by • 0
0
votes
1
reply
403
views
dba.count generates less ranges than input peakset
diffbind dba.count dba.peakset
updated 3.4 years ago by ★ 4.1k • written 3.5 years ago by • 0
3
votes
7
replies
1.1k
views
dba.count with pre-defined regions
dba.count dba chipseq diffbind
updated 3.8 years ago by ★ 4.1k • written 3.8 years ago by ▴ 10
0
votes
6
replies
947
views
Warnings when update DiffBind and running errors
diffbind atac-seq dba.count
updated 3.8 years ago by ★ 4.1k • written 3.8 years ago by • 0
3
votes
9
replies
1.1k
views
Error When using dba.count() in DiffBind
dba.count atac-seq diffbind
updated 3.9 years ago by ▴ 640 • written 3.9 years ago by • 0
0
votes
1
reply
472
views
Error with dba.count function code
diffbind dba.count atac-seq
updated 3.9 years ago by ▴ 640 • written 3.9 years ago by • 0
0
votes
3
replies
761
views
Error with dba.count function
diffbind dba.count
updated 3.9 years ago by ▴ 640 • written 3.9 years ago by • 0
1
vote
5
replies
1.1k
views
Problem reading Bed file using dba.count in DiffBind
DiffBind dba.count Chip-Seq Differential analysis
updated 6 months ago by • 0 • written 4.0 years ago by ▴ 40
0
votes
2
replies
574
views
Diffbind results - non uniform width
diffbind dba.count
updated 4.4 years ago by ★ 4.1k • written 4.4 years ago by ▴ 20
0
votes
1
reply
1.1k
views
DiffBind - Difference in counting methodology when summits option in dba.count is on?
diffbind dba.count summits
updated 4.7 years ago by ★ 4.1k • written 4.8 years ago by • 0
1
vote
2
replies
656
views
The descriptions of score methods in DiffBind
DiffBind dba.count score manual PDF
updated 4.8 years ago by ★ 4.1k • written 4.8 years ago by ▴ 20
0
votes
3
replies
737
views
DiffBind dba.count() seqfault
diffbind dba.count
5.3 years ago em540 • 0
1
vote
3
replies
1.3k
views
[DiffBind] Memory issues with dba.count()
diffbind bigmemory matrix dba.count
updated 6.1 years ago by ★ 4.1k • written 6.1 years ago by ▴ 570
18 results • Page 1 of 1
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Comment: rtracklayer: error in importing bigwig file in r in windows by millerh1 • 0
I'm currently experiencing the same. I'm on `rtracklayer` version 1.53.1. On ubuntu: ``` > import("https://rlbase-data.s3.amazonaws.com/c…
Comment: Per gene Covariates by Michael Love 34k
If you have per gene and per sample corrections, you can use normalization factors (see DESeq2 paper and vignette first on this topic). Fo…
Comment: deseq2 machine sizing best practices for very large data set by Michael Love 34k
I recommend and use limma-voom for large bulk datasets often, it is much faster than GLM-based methods.
Comment: branchpointer: trouble to read gtf by b.signal • 0
Hi Frank, Your example gtf is missing a gene_id. In the old code we also required a transcript_type/transcript_biotype, and a gene_type/g…
Comment: deseq2 machine sizing best practices for very large data set by ATpoint ▴ 840
https://support.bioconductor.org/p/73399/#73400
Votes
C: rtracklayer: error in importing bigwig file in r in windows
rtracklayer: error in importing bigwig file in r in windows
Answer: Format roxgen comment (alternative to formatR)
Answer: Format roxgen comment (alternative to formatR)
Format roxgen comment (alternative to formatR)
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