Showing : dba.count • reset
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DiffBind3: all samples have 0 counts for all genes. check the counting script
dba.count DiffBind3
19 months ago yang • 0
1
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6
replies
1.1k
views
DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
DiffBind dba.count
updated 20 months ago by ★ 5.0k • written 20 months ago by • 0
1
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3
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961
views
issue with DiffBind dba.count
bam bai DiffBind dba.count Diffbind
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by ▴ 10
0
votes
6
replies
2.5k
views
DiffBind: Error in heights * sapply(called, function(x) x)
diffbind dba.count summits
updated 2.7 years ago by ★ 5.0k • written 5.8 years ago by • 0
0
votes
1
reply
449
views
diffbind counts as same values
diffbind dba.count dba.report
updated 4.0 years ago by ★ 5.0k • written 4.0 years ago by • 0
0
votes
4
replies
1.6k
views
How to produce the fraction of reads in peaks (FRiP) using DiffBind
DiffBind FRiP ATAC-Seq dba.show dba.count
updated 4.5 years ago by ★ 5.0k • written 4.5 years ago by ▴ 20
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votes
1
reply
1.2k
views
Handing duplicates in DiffBind
diffbind dba.count bRemoveDuplicates bUseSummarizeOverlaps
updated 4.5 years ago by ★ 5.0k • written 4.6 years ago by • 0
1
vote
1
reply
1.2k
views
how to retrieve binding affinity matrix in diffbind
diffbind dba.count
updated 4.6 years ago by ★ 5.0k • written 4.6 years ago by • 0
0
votes
1
reply
618
views
dba.count generates less ranges than input peakset
diffbind dba.count dba.peakset
updated 5.5 years ago by ★ 5.0k • written 5.5 years ago by • 0
3
votes
7
replies
1.6k
views
dba.count with pre-defined regions
dba.count dba chipseq diffbind
updated 5.8 years ago by ★ 5.0k • written 5.8 years ago by ▴ 10
0
votes
6
replies
1.7k
views
Warnings when update DiffBind and running errors
diffbind atac-seq dba.count
updated 5.8 years ago by ★ 5.0k • written 5.8 years ago by • 0
3
votes
9
replies
2.1k
views
Error When using dba.count() in DiffBind
dba.count atac-seq diffbind
updated 5.9 years ago by ▴ 650 • written 5.9 years ago by • 0
0
votes
1
reply
817
views
Error with dba.count function code
diffbind dba.count atac-seq
updated 5.9 years ago by ▴ 650 • written 5.9 years ago by • 0
0
votes
3
replies
1.2k
views
Error with dba.count function
diffbind dba.count
updated 5.9 years ago by ▴ 650 • written 5.9 years ago by • 0
1
vote
5
replies
2.1k
views
Problem reading Bed file using dba.count in DiffBind
DiffBind dba.count Chip-Seq Differential analysis
updated 2.5 years ago by • 0 • written 6.0 years ago by ▴ 40
0
votes
2
replies
859
views
Diffbind results - non uniform width
diffbind dba.count
updated 6.4 years ago by ★ 5.0k • written 6.4 years ago by ▴ 20
0
votes
1
reply
1.5k
views
DiffBind - Difference in counting methodology when summits option in dba.count is on?
diffbind dba.count summits
updated 6.7 years ago by ★ 5.0k • written 6.8 years ago by • 0
1
vote
2
replies
974
views
The descriptions of score methods in DiffBind
DiffBind dba.count score manual PDF
updated 6.8 years ago by ★ 5.0k • written 6.8 years ago by ▴ 20
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3
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1.1k
views
DiffBind dba.count() seqfault
diffbind dba.count
7.4 years ago em540 • 0
1
vote
3
replies
2.0k
views
[DiffBind] Memory issues with dba.count()
diffbind bigmemory matrix dba.count
updated 8.1 years ago by ★ 5.0k • written 8.1 years ago by ▴ 660
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Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error by Gordon Smyth 48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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