Biostar Fitted model

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edgeR cpm edger fitted model explained variance

updated 4.5 years ago by Gordon Smyth 46k • written 4.5 years ago by alakatos ▴ 120

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Comment: DESeq2 LFC changes sign after adjusting for surrogates by Marie • 0

Thanks a lot!

Comment: how to use Rsamtools to parse extra fields from STAR alignment by Jiping Wang ▴ 90

Thanks so much! That's exactly the solution I am looking for.

Comment: Mapping genome regions to gene symbols by michaelwegert • 0

function > elementLengths() was deprecated in S4Vectors version update 0.16.0 (in 2016?). \ So I used: > elementNROWS() [https://web.m…

Comment: OPLS-DA: confidence interval for accuracy metric by etienne.thevenot ▴ 20

- The bootstrapping approach can be used to compute the CIs: see here for an example: Mendez et al. (2019). « A comparative evaluation …

Comment: Data input for aracne2regulon function in viper package by xlal • 0

You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…

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